Variant report

Variant	rs8005466
Chromosome Location	chr14:68980423-68980424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68974039..68976954-chr14:68979393..68981766,3	MCF-7	breast:
2	chr14:68772020..68773538-chr14:68978440..68980625,2	MCF-7	breast:
3	chr14:68713328..68715932-chr14:68978216..68981551,3	MCF-7	breast:
4	chr14:68939895..68941707-chr14:68980300..68982996,2	MCF-7	breast:
5	chr14:68934148..68937192-chr14:68979856..68982063,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17105601	1.00[MEX][hapmap]
rs17105879	1.00[MEX][hapmap]
rs2525502	1.00[MEX][hapmap]
rs2525518	1.00[MEX][hapmap]
rs2842324	1.00[MEX][hapmap]
rs2842336	1.00[MEX][hapmap]
rs2842337	1.00[MEX][hapmap]
rs7158636	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7359118	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68967400-68981600	Enhancers	Fetal Muscle Leg	muscle
2	chr14:68967400-68982400	Enhancers	Primary B cells from peripheral blood	blood
3	chr14:68968000-68991200	Enhancers	Fetal Lung	lung
4	chr14:68971000-68983800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:68971800-68981400	Enhancers	Fetal Muscle Trunk	muscle
6	chr14:68972600-68982000	Enhancers	Fetal Intestine Small	intestine
7	chr14:68973400-68981200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr14:68973400-68985000	Weak transcription	Colonic Mucosa	Colon
9	chr14:68973800-68984600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:68974800-68984600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr14:68974800-68984800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr14:68975400-68981600	Enhancers	Fetal Stomach	stomach
13	chr14:68975600-68980800	Enhancers	Esophagus	oesophagus
14	chr14:68975800-68982400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr14:68976000-68981400	Enhancers	Colon Smooth Muscle	Colon
16	chr14:68976000-68981400	Enhancers	Rectal Smooth Muscle	rectum
17	chr14:68976400-68985800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr14:68976800-68982400	Enhancers	HMEC	breast
19	chr14:68976800-68983800	Weak transcription	Gastric	stomach
20	chr14:68977000-68982400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr14:68977400-68980600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr14:68977400-68984400	Weak transcription	HepG2	liver
23	chr14:68977600-68983600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:68977600-68985800	Weak transcription	Osteobl	bone
25	chr14:68977600-68988400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr14:68977800-68981400	Enhancers	Stomach Smooth Muscle	stomach
27	chr14:68977800-68984600	Weak transcription	Left Ventricle	heart
28	chr14:68978200-68981200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr14:68978200-68981400	Enhancers	Adipose Nuclei	Adipose
30	chr14:68978200-68983800	Weak transcription	Right Atrium	heart
31	chr14:68978400-68981400	Enhancers	Fetal Thymus	thymus
32	chr14:68978400-68982400	Enhancers	Primary B cells from cord blood	blood
33	chr14:68978600-68981400	Enhancers	Lung	lung
34	chr14:68978600-68982400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr14:68978600-68982400	Enhancers	Stomach Mucosa	stomach
36	chr14:68979000-68983800	Weak transcription	Pancreas	Pancrea
37	chr14:68979000-68985200	Weak transcription	Aorta	Aorta
38	chr14:68979200-68980800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr14:68979200-68981000	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr14:68979200-68981000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr14:68979200-68981400	Enhancers	Primary T cells fromperipheralblood	blood
42	chr14:68979200-68981400	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr14:68979200-68981800	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr14:68979200-68982200	Enhancers	Placenta Amnion	Placenta Amnion
45	chr14:68979400-68981400	Enhancers	Primary T cells from cord blood	blood
46	chr14:68979400-68981400	Enhancers	Thymus	Thymus
47	chr14:68979600-68980800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr14:68979600-68981000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr14:68979600-68981000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr14:68979600-68981200	Enhancers	Hela-S3	cervix

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