Variant report

Variant	rs2842324
Chromosome Location	chr14:69032372-69032373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69030740..69033327-chr14:69250048..69252689,2	K562	blood:
2	chr14:68916102..68918734-chr14:69031708..69033392,2	MCF-7	breast:
3	chr14:69030473..69032904-chr14:69122357..69124258,2	MCF-7	breast:
4	chr14:69030262..69032857-chr14:69281297..69284839,4	MCF-7	breast:
5	chr14:69028863..69039900-chr14:69256962..69265663,39	MCF-7	breast:
6	chr14:68934455..68938409-chr14:69031168..69034448,4	MCF-7	breast:
7	chr14:69013020..69016426-chr14:69030419..69035616,4	MCF-7	breast:
8	chr14:69027264..69032673-chr14:69034374..69038789,10	MCF-7	breast:
9	chr14:69029510..69035367-chr14:69250877..69256211,7	MCF-7	breast:
10	chr14:68911957..68914084-chr14:69032259..69034812,2	MCF-7	breast:
11	chr14:69027748..69038857-chr14:69257974..69264472,24	MCF-7	breast:
12	chr14:68715572..68717664-chr14:69031801..69033626,2	MCF-7	breast:
13	chr14:68953516..68956105-chr14:69031281..69032834,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17105601	1.00[MEX][hapmap]
rs17105879	1.00[MEX][hapmap]
rs2525502	1.00[MEX][hapmap]
rs2525518	1.00[MEX][hapmap]
rs2842336	1.00[MEX][hapmap]
rs2842337	1.00[MEX][hapmap]
rs7158636	1.00[MEX][hapmap]
rs7359118	1.00[MEX][hapmap]
rs8005466	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69021000-69036200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:69022600-69032600	Weak transcription	NHDF-Ad	bronchial
3	chr14:69026400-69033600	Enhancers	Ovary	ovary
4	chr14:69027200-69033400	Enhancers	Liver	Liver
5	chr14:69027600-69032600	Enhancers	Fetal Stomach	stomach
6	chr14:69027600-69032800	Enhancers	Fetal Muscle Trunk	muscle
7	chr14:69027600-69033000	Enhancers	Primary T cells from cord blood	blood
8	chr14:69027600-69033400	Enhancers	Placenta	Placenta
9	chr14:69027600-69033600	Enhancers	Fetal Muscle Leg	muscle
10	chr14:69027800-69033400	Enhancers	Lung	lung
11	chr14:69027800-69033400	Enhancers	Pancreas	Pancrea
12	chr14:69027800-69033600	Enhancers	Fetal Thymus	thymus
13	chr14:69028000-69032600	Enhancers	Primary hematopoietic stem cells	blood
14	chr14:69028000-69032800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr14:69028000-69033600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr14:69028200-69032400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr14:69028200-69032400	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr14:69028200-69032600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:69028200-69033400	Enhancers	Fetal Lung	lung
20	chr14:69028200-69033400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr14:69028200-69033600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr14:69028200-69033600	Enhancers	Adipose Nuclei	Adipose
23	chr14:69028400-69032600	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr14:69028400-69033400	Enhancers	Fetal Kidney	kidney
25	chr14:69028400-69033600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr14:69028600-69032800	Enhancers	Thymus	Thymus
27	chr14:69028600-69033000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr14:69028600-69033400	Enhancers	Stomach Mucosa	stomach
29	chr14:69028800-69032400	Enhancers	Primary B cells from peripheral blood	blood
30	chr14:69028800-69032400	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr14:69029000-69033400	Enhancers	Esophagus	oesophagus
32	chr14:69029000-69033400	Enhancers	Spleen	Spleen
33	chr14:69029200-69033200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr14:69029200-69035000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr14:69029400-69032400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr14:69029400-69032800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr14:69029400-69033400	Enhancers	Right Atrium	heart
38	chr14:69029400-69035400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr14:69029600-69032800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr14:69029600-69032800	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr14:69029600-69033200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr14:69029800-69032800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr14:69029800-69033200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr14:69029800-69036400	Weak transcription	Gastric	stomach
45	chr14:69030000-69032400	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr14:69030000-69032400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr14:69030000-69032800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr14:69030000-69033000	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr14:69030000-69033400	Enhancers	Placenta Amnion	Placenta Amnion
50	chr14:69030200-69032800	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links