Variant report

Variant	rs2525502
Chromosome Location	chr14:69025567-69025568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69023246..69027101-chr14:69028219..69030991,3	MCF-7	breast:
2	chr14:69013842..69015927-chr14:69025144..69027586,2	MCF-7	breast:
3	chr14:69019342..69021876-chr14:69025131..69028551,3	MCF-7	breast:
4	chr14:69007812..69009771-chr14:69024457..69026624,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17105601	1.00[MEX][hapmap]
rs17105822	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17105879	1.00[MEX][hapmap]
rs2428615	0.87[ASN][1000 genomes]
rs2428616	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2525515	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2525516	0.87[ASN][1000 genomes]
rs2525517	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2525518	0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[ASN][1000 genomes]
rs2525519	0.87[ASN][1000 genomes]
rs2525520	0.81[ASN][1000 genomes]
rs2525529	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2842324	1.00[MEX][hapmap]
rs2842332	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2842335	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2842336	0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[ASN][1000 genomes]
rs2842337	0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[ASN][1000 genomes]
rs2842343	0.83[CHD][hapmap]
rs2842344	0.83[CHD][hapmap]
rs6573841	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs7158636	1.00[MEX][hapmap]
rs727392	0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7359118	1.00[MEX][hapmap]
rs8005466	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv516239	chr14:69010690-69025870	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69017400-69030400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:69017800-69028200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:69018200-69029600	Weak transcription	Fetal Intestine Small	intestine
4	chr14:69018600-69026400	Weak transcription	Ovary	ovary
5	chr14:69019000-69028200	Weak transcription	Fetal Lung	lung
6	chr14:69019200-69028200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:69019400-69028400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:69019800-69029800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr14:69020400-69028400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr14:69020400-69030000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr14:69021000-69036200	Weak transcription	Brain Germinal Matrix	brain
12	chr14:69021200-69028400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:69021200-69028400	Weak transcription	Fetal Kidney	kidney
14	chr14:69021200-69028600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr14:69021400-69030000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr14:69022000-69028600	Weak transcription	Thymus	Thymus
17	chr14:69022200-69027600	Weak transcription	Primary T cells from cord blood	blood
18	chr14:69022200-69031400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:69022400-69027600	Weak transcription	Placenta	Placenta
20	chr14:69022400-69028400	Weak transcription	Right Ventricle	heart
21	chr14:69022400-69028600	Weak transcription	Stomach Mucosa	stomach
22	chr14:69022400-69029800	Weak transcription	NH-A	brain
23	chr14:69022600-69028000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr14:69022600-69028200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr14:69022600-69028400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr14:69022600-69029400	Weak transcription	HMEC	breast
27	chr14:69022600-69032600	Weak transcription	NHDF-Ad	bronchial
28	chr14:69022800-69027600	Weak transcription	Colon Smooth Muscle	Colon
29	chr14:69022800-69028000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr14:69022800-69028000	Weak transcription	A549	lung
31	chr14:69022800-69028200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr14:69022800-69028200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr14:69022800-69028200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr14:69022800-69029200	Weak transcription	NHEK	skin
35	chr14:69023000-69027600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr14:69023000-69028200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr14:69023200-69027800	Weak transcription	Lung	lung
38	chr14:69023200-69028200	Weak transcription	HSMMtube	muscle
39	chr14:69023200-69028400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr14:69023200-69029200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr14:69023200-69029400	Weak transcription	Aorta	Aorta
42	chr14:69023600-69027600	Weak transcription	Fetal Muscle Leg	muscle
43	chr14:69024200-69029600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr14:69025000-69027800	Weak transcription	Fetal Thymus	thymus
45	chr14:69025200-69028000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr14:69025200-69028800	Weak transcription	Primary B cells from peripheral blood	blood
47	chr14:69025200-69029000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr14:69025200-69031200	Weak transcription	HUVEC	blood vessel
49	chr14:69025400-69027000	Active TSS	Liver	Liver
50	chr14:69025400-69027400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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