Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69000957..69002671-chr14:69010193..69012853,2	MCF-7	breast:
2	chr14:69001801..69004663-chr14:69006865..69008433,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17105822	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2428615	0.94[ASN][1000 genomes]
rs2428616	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2525502	0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2525515	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2525516	0.94[ASN][1000 genomes]
rs2525517	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2525518	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2525519	0.94[ASN][1000 genomes]
rs2525520	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2525529	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2842332	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2842335	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2842336	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2842337	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs55670604	0.97[EUR][1000 genomes]
rs56054401	0.90[EUR][1000 genomes]
rs61985775	0.90[EUR][1000 genomes]
rs61985777	0.90[EUR][1000 genomes]
rs6573841	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs8012659	0.81[CEU][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1048064	chr14:68991041-69012766	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68996200-69002600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:68996200-69007800	Weak transcription	Stomach Mucosa	stomach
3	chr14:68998200-69002200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:69000000-69002400	Enhancers	NHDF-Ad	bronchial
5	chr14:69000000-69003000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:69000400-69002000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr14:69000800-69002600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr14:69001200-69003600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:69001200-69003600	Enhancers	HMEC	breast
10	chr14:69001400-69002200	Weak transcription	HSMMtube	muscle
11	chr14:69001800-69002000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr14:69001800-69003000	Enhancers	Hela-S3	cervix
13	chr14:69001800-69003000	Enhancers	HSMM	muscle
14	chr14:69001800-69003200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:69001800-69003200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:69001800-69003200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr14:69001800-69003400	Enhancers	NHLF	lung
18	chr14:69001800-69003600	Enhancers	NHEK	skin

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