Variant report

Variant	rs61985777
Chromosome Location	chr14:69015364-69015365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69015136..69018224-chr14:69257957..69260697,4	MCF-7	breast:
2	chr14:68994426..68996258-chr14:69013993..69016421,2	MCF-7	breast:
3	chr14:69013842..69015927-chr14:69025144..69027586,2	MCF-7	breast:
4	chr14:69013020..69016426-chr14:69030419..69035616,4	MCF-7	breast:
5	chr14:69013185..69015813-chr14:69258202..69261056,2	K562	blood:
6	chr14:69014687..69017316-chr14:69017983..69019961,2	MCF-7	breast:
7	chr14:69014425..69017204-chr14:69022282..69023965,2	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12100794	1.00[ASN][1000 genomes]
rs17105852	1.00[ASN][1000 genomes]
rs2525506	1.00[ASN][1000 genomes]
rs2525520	0.90[EUR][1000 genomes]
rs4902602	1.00[ASN][1000 genomes]
rs55670604	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55982127	1.00[ASN][1000 genomes]
rs56026252	1.00[ASN][1000 genomes]
rs56054401	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56147515	1.00[ASN][1000 genomes]
rs56239917	1.00[ASN][1000 genomes]
rs61985775	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs727392	0.90[EUR][1000 genomes]
rs8012659	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017001	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv516239	chr14:69010690-69025870	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69002400-69016600	Weak transcription	Gastric	stomach
2	chr14:69009000-69023600	Enhancers	Fetal Muscle Leg	muscle
3	chr14:69009200-69016600	Enhancers	Colon Smooth Muscle	Colon
4	chr14:69009400-69017600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:69009600-69016000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr14:69010400-69017000	Enhancers	Pancreas	Pancrea
7	chr14:69010400-69018600	Enhancers	Fetal Stomach	stomach
8	chr14:69010800-69017800	Enhancers	Stomach Mucosa	stomach
9	chr14:69011400-69018000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:69012600-69017200	Enhancers	Lung	lung
11	chr14:69012600-69018400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr14:69012800-69015800	Enhancers	Esophagus	oesophagus
13	chr14:69012800-69015800	Enhancers	Psoas Muscle	Psoas
14	chr14:69012800-69019400	Enhancers	Left Ventricle	heart
15	chr14:69012800-69022000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr14:69013000-69015800	Enhancers	Aorta	Aorta
17	chr14:69013000-69019200	Enhancers	Right Atrium	heart
18	chr14:69013200-69016000	Enhancers	Placenta Amnion	Placenta Amnion
19	chr14:69013400-69015800	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr14:69013400-69016000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:69013400-69016000	Enhancers	Duodenum Mucosa	Duodenum
22	chr14:69013400-69016000	Enhancers	Right Ventricle	heart
23	chr14:69013400-69016000	Flanking Active TSS	NHEK	skin
24	chr14:69013400-69018600	Enhancers	Ovary	ovary
25	chr14:69013400-69022600	Enhancers	HUVEC	blood vessel
26	chr14:69013600-69015600	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr14:69013600-69016000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr14:69013600-69019000	Enhancers	Fetal Heart	heart
29	chr14:69013600-69019800	Enhancers	Fetal Kidney	kidney
30	chr14:69013600-69021200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr14:69013600-69022600	Enhancers	Adipose Nuclei	Adipose
32	chr14:69013800-69016000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr14:69013800-69016000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr14:69013800-69016000	Enhancers	Colonic Mucosa	Colon
35	chr14:69013800-69017000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr14:69013800-69017200	Enhancers	Fetal Muscle Trunk	muscle
37	chr14:69013800-69017400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr14:69013800-69017400	Enhancers	Fetal Intestine Large	intestine
39	chr14:69013800-69018200	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr14:69013800-69018200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr14:69014000-69015600	Enhancers	Brain Anterior Caudate	brain
42	chr14:69014000-69015600	Genic enhancers	Fetal Intestine Small	intestine
43	chr14:69014000-69017400	Enhancers	Fetal Thymus	thymus
44	chr14:69014000-69018200	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr14:69014000-69018400	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr14:69014000-69018600	Enhancers	Fetal Brain Male	brain
47	chr14:69014200-69015800	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr14:69014200-69015800	Enhancers	Rectal Mucosa Donor 29	rectum
49	chr14:69014200-69016000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:69014200-69016000	Enhancers	HUES64 Cell Line	embryonic stem cell

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