Variant report

Variant	rs55670604
Chromosome Location	chr14:69006916-69006917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69001801..69004663-chr14:69006865..69008433,2	MCF-7	breast:
2	chr14:69003922..69007873-chr14:69256897..69260047,3	MCF-7	breast:
3	chr14:69006886..69009005-chr14:69017187..69019247,2	MCF-7	breast:
4	chr14:69006233..69007064-chr14:69036424..69037353,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12100794	1.00[ASN][1000 genomes]
rs17105852	1.00[ASN][1000 genomes]
rs2525506	1.00[ASN][1000 genomes]
rs2525520	0.97[EUR][1000 genomes]
rs4902602	1.00[ASN][1000 genomes]
rs55982127	1.00[ASN][1000 genomes]
rs56026252	1.00[ASN][1000 genomes]
rs56054401	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56147515	1.00[ASN][1000 genomes]
rs56239917	1.00[ASN][1000 genomes]
rs61985775	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61985777	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61985815	1.00[AFR][1000 genomes]
rs727392	0.97[EUR][1000 genomes]
rs8012659	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017001	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1048064	chr14:68991041-69012766	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68996200-69007800	Weak transcription	Stomach Mucosa	stomach
2	chr14:69002400-69016600	Weak transcription	Gastric	stomach
3	chr14:69003000-69007800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr14:69003000-69007800	Weak transcription	Hela-S3	cervix
5	chr14:69003000-69008000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:69003000-69009000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr14:69003200-69009000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:69003600-69007800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:69003600-69008000	Weak transcription	HMEC	breast
10	chr14:69003600-69009000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:69003600-69009000	Weak transcription	NHEK	skin
12	chr14:69004400-69008600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:69004600-69008400	Enhancers	Brain Germinal Matrix	brain
14	chr14:69004600-69009800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:69004600-69010600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:69004800-69007000	Enhancers	Left Ventricle	heart
17	chr14:69004800-69007000	Enhancers	Stomach Smooth Muscle	stomach
18	chr14:69004800-69007400	Enhancers	Psoas Muscle	Psoas
19	chr14:69004800-69008200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr14:69004800-69008600	Enhancers	Fetal Muscle Leg	muscle
21	chr14:69005000-69007800	Enhancers	Brain Anterior Caudate	brain
22	chr14:69005000-69008400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr14:69005000-69008800	Enhancers	Colon Smooth Muscle	Colon
24	chr14:69005000-69008800	Enhancers	Fetal Stomach	stomach
25	chr14:69005000-69010400	Weak transcription	Pancreas	Pancrea
26	chr14:69005000-69013400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr14:69005000-69015000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr14:69005400-69007200	Enhancers	Right Ventricle	heart
29	chr14:69005400-69008400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr14:69005600-69007000	Enhancers	Fetal Kidney	kidney
31	chr14:69005600-69007400	Weak transcription	Fetal Thymus	thymus
32	chr14:69005800-69008000	Weak transcription	Adipose Nuclei	Adipose
33	chr14:69006000-69014600	Enhancers	NHDF-Ad	bronchial
34	chr14:69006200-69007400	Enhancers	Fetal Heart	heart
35	chr14:69006200-69010400	Weak transcription	Aorta	Aorta
36	chr14:69006200-69012000	Weak transcription	Lung	lung
37	chr14:69006400-69007000	Enhancers	HSMM	muscle
38	chr14:69006400-69008000	Weak transcription	Fetal Intestine Small	intestine
39	chr14:69006400-69013200	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr14:69006400-69013800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr14:69006600-69007000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr14:69006600-69007800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr14:69006600-69008000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr14:69006600-69008400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr14:69006600-69008400	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr14:69006800-69007800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr14:69006800-69007800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr14:69006800-69007800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr14:69006800-69007800	Weak transcription	Ovary	ovary
50	chr14:69006800-69007800	Weak transcription	Rectal Smooth Muscle	rectum

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