Variant report

Variant	rs2842332
Chromosome Location	chr14:69009498-69009499
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69009163..69010827-chr14:69260601..69262528,2	MCF-7	breast:
2	chr14:69007812..69009771-chr14:69024457..69026624,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17105822	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2428615	0.93[ASN][1000 genomes]
rs2428616	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2525502	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2525515	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2525516	0.93[ASN][1000 genomes]
rs2525517	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2525518	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2525519	0.93[ASN][1000 genomes]
rs2525520	0.87[ASN][1000 genomes]
rs2525529	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2842335	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2842336	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2842337	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6573841	1.00[JPT][hapmap]
rs727392	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1048064	chr14:68991041-69012766	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69002400-69016600	Weak transcription	Gastric	stomach
2	chr14:69004600-69009800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr14:69004600-69010600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:69005000-69010400	Weak transcription	Pancreas	Pancrea
5	chr14:69005000-69013400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:69005000-69015000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:69006000-69014600	Enhancers	NHDF-Ad	bronchial
8	chr14:69006200-69010400	Weak transcription	Aorta	Aorta
9	chr14:69006200-69012000	Weak transcription	Lung	lung
10	chr14:69006400-69013200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr14:69006400-69013800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:69006800-69010200	Weak transcription	Fetal Lung	lung
13	chr14:69006800-69010400	Weak transcription	HSMMtube	muscle
14	chr14:69006800-69011200	Weak transcription	Placenta	Placenta
15	chr14:69006800-69011600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:69006800-69012800	Weak transcription	Esophagus	oesophagus
17	chr14:69006800-69013800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr14:69006800-69014200	Weak transcription	Brain Substantia Nigra	brain
19	chr14:69006800-69014400	Weak transcription	Brain Hippocampus Middle	brain
20	chr14:69006800-69014600	Weak transcription	Brain Angular Gyrus	brain
21	chr14:69007000-69011000	Weak transcription	Left Ventricle	heart
22	chr14:69007000-69011400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr14:69007200-69013400	Weak transcription	Right Ventricle	heart
24	chr14:69007400-69013600	Weak transcription	Fetal Heart	heart
25	chr14:69007800-69010000	Enhancers	Hela-S3	cervix
26	chr14:69007800-69013800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:69007800-69014000	Weak transcription	Brain Anterior Caudate	brain
28	chr14:69008000-69010400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:69008000-69013800	Enhancers	HMEC	breast
30	chr14:69008000-69013800	Enhancers	HSMM	muscle
31	chr14:69008200-69010200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr14:69008200-69013400	Weak transcription	Ovary	ovary
33	chr14:69008400-69009600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr14:69008400-69009600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr14:69008400-69009800	Weak transcription	Psoas Muscle	Psoas
36	chr14:69008400-69009800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr14:69008400-69010400	Weak transcription	Adipose Nuclei	Adipose
38	chr14:69008400-69010400	Weak transcription	Right Atrium	heart
39	chr14:69008400-69010400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr14:69008400-69010800	Weak transcription	Fetal Thymus	thymus
41	chr14:69008400-69010800	Weak transcription	Stomach Mucosa	stomach
42	chr14:69008400-69011000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr14:69008400-69011600	Weak transcription	Fetal Intestine Small	intestine
44	chr14:69008400-69011800	Weak transcription	Spleen	Spleen
45	chr14:69008400-69013600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr14:69008400-69013600	Weak transcription	Fetal Kidney	kidney
47	chr14:69008400-69013800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr14:69008400-69014200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:69008600-69010400	Weak transcription	NHLF	lung
50	chr14:69009000-69009800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links