Variant report

Variant	rs2842336
Chromosome Location	chr14:69002519-69002520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69000957..69002671-chr14:69010193..69012853,2	MCF-7	breast:
2	chr14:69001801..69004663-chr14:69006865..69008433,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11845281	1.00[CEU][hapmap]
rs11846166	1.00[CEU][hapmap]
rs17105601	1.00[MEX][hapmap]
rs17105822	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[ASN][1000 genomes]
rs17105879	1.00[MEX][hapmap]
rs2428615	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2428616	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2525502	0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[ASN][1000 genomes]
rs2525515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2525516	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2525517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2525518	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2525519	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2525520	0.94[ASN][1000 genomes]
rs2525529	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2842324	1.00[MEX][hapmap]
rs2842332	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2842335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2842337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573841	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs7158636	1.00[MEX][hapmap]
rs727392	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7359118	1.00[MEX][hapmap]
rs8005466	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1048064	chr14:68991041-69012766	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68996200-69002600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:68996200-69007800	Weak transcription	Stomach Mucosa	stomach
3	chr14:69000000-69003000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr14:69000800-69002600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr14:69001200-69003600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:69001200-69003600	Enhancers	HMEC	breast
7	chr14:69001800-69003000	Enhancers	Hela-S3	cervix
8	chr14:69001800-69003000	Enhancers	HSMM	muscle
9	chr14:69001800-69003200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:69001800-69003200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:69001800-69003200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr14:69001800-69003400	Enhancers	NHLF	lung
13	chr14:69001800-69003600	Enhancers	NHEK	skin
14	chr14:69002000-69003000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr14:69002000-69003200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:69002000-69003600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:69002200-69002800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:69002200-69002800	Enhancers	Placenta	Placenta
19	chr14:69002200-69002800	Enhancers	A549	lung
20	chr14:69002200-69003000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:69002200-69003000	Enhancers	HSMMtube	muscle
22	chr14:69002200-69003200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:69002200-69003200	Enhancers	Osteobl	bone
24	chr14:69002400-69002600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr14:69002400-69002800	Enhancers	Esophagus	oesophagus
26	chr14:69002400-69002800	Flanking Active TSS	NHDF-Ad	bronchial
27	chr14:69002400-69003200	Enhancers	NH-A	brain
28	chr14:69002400-69016600	Weak transcription	Gastric	stomach

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