Variant report

Variant	rs17105879
Chromosome Location	chr14:69040547-69040548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69034656..69036292-chr14:69039582..69041305,3	MCF-7	breast:
2	chr14:69040226..69045730-chr14:69257652..69262741,8	MCF-7	breast:
3	chr14:69037050..69041400-chr14:69041759..69045325,4	MCF-7	breast:
4	chr14:68932415..68937640-chr14:69040451..69046051,7	MCF-7	breast:
5	chr14:68775479..68777224-chr14:69038956..69041155,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17105601	1.00[MEX][hapmap]
rs2525502	1.00[MEX][hapmap]
rs2525518	1.00[MEX][hapmap]
rs2842324	1.00[MEX][hapmap]
rs2842336	1.00[MEX][hapmap]
rs2842337	1.00[MEX][hapmap]
rs58253081	0.80[AFR][1000 genomes]
rs7158636	1.00[MEX][hapmap]
rs7359118	1.00[MEX][hapmap]
rs8005466	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69030800-69041600	Weak transcription	NHLF	lung
2	chr14:69031200-69041800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:69032400-69041400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr14:69032800-69040800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:69033200-69041600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:69033600-69041600	Weak transcription	Hela-S3	cervix
7	chr14:69036400-69041000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr14:69036800-69041400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:69036800-69052000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:69037000-69041600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr14:69037000-69041600	Weak transcription	Psoas Muscle	Psoas
12	chr14:69037000-69041800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:69037000-69042000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr14:69037000-69052600	Weak transcription	Colonic Mucosa	Colon
15	chr14:69037200-69041600	Weak transcription	Ovary	ovary
16	chr14:69037200-69041600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr14:69037400-69040600	Weak transcription	Adipose Nuclei	Adipose
18	chr14:69037400-69041000	Weak transcription	Placenta	Placenta
19	chr14:69037400-69041200	Weak transcription	Brain Anterior Caudate	brain
20	chr14:69037400-69041400	Weak transcription	Fetal Lung	lung
21	chr14:69037400-69041600	Weak transcription	Fetal Heart	heart
22	chr14:69037400-69041600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr14:69037400-69042800	Weak transcription	Gastric	stomach
24	chr14:69037400-69042800	Weak transcription	Right Ventricle	heart
25	chr14:69037400-69042800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr14:69037400-69054000	Weak transcription	Fetal Kidney	kidney
27	chr14:69037800-69041600	Weak transcription	HUVEC	blood vessel
28	chr14:69037800-69042800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr14:69038000-69042600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:69038400-69041200	Weak transcription	Fetal Muscle Leg	muscle
31	chr14:69039200-69041400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr14:69039200-69044400	Weak transcription	Liver	Liver
33	chr14:69039400-69042800	Weak transcription	Pancreas	Pancrea
34	chr14:69039600-69041800	Enhancers	Primary T cells from cord blood	blood
35	chr14:69039600-69041800	Weak transcription	HepG2	liver
36	chr14:69039800-69041400	Weak transcription	Spleen	Spleen
37	chr14:69039800-69042000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:69040000-69042000	Enhancers	Fetal Thymus	thymus
39	chr14:69040400-69040600	Enhancers	Brain Hippocampus Middle	brain
40	chr14:69040400-69040800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr14:69040400-69043800	Enhancers	Lung	lung

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