Variant report

Variant	rs17105501
Chromosome Location	chr14:68844779-68844780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68839948..68842055-chr14:68844186..68845983,2	MCF-7	breast:
2	chr14:68842793..68845023-chr14:69283063..69285593,2	K562	blood:
3	chr14:68833551..68835141-chr14:68843707..68845855,2	K562	blood:
4	chr14:68841263..68843280-chr14:68843376..68844919,2	MCF-7	breast:
5	chr14:68843051..68845983-chr14:68924155..68927430,4	MCF-7	breast:
6	chr14:68843357..68844886-chr14:68924790..68926556,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10131303	1.00[GIH][hapmap]
rs10145446	1.00[GIH][hapmap]
rs11626015	1.00[GIH][hapmap]
rs1570107	1.00[GIH][hapmap]
rs17105494	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17105545	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs17105601	1.00[GIH][hapmap]
rs17105664	1.00[GIH][hapmap]
rs7149619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7359118	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs749350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs749352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68832000-68851600	Weak transcription	Lung	lung
2	chr14:68833000-68845200	Enhancers	Primary B cells from peripheral blood	blood
3	chr14:68834400-68846400	Weak transcription	Fetal Heart	heart
4	chr14:68836400-68847000	Weak transcription	Aorta	Aorta
5	chr14:68839800-68850600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:68840000-68845800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr14:68840600-68847600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr14:68840600-68847800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr14:68840800-68845200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr14:68840800-68847400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr14:68840800-68847400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr14:68840800-68847600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr14:68840800-68847600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr14:68841000-68846000	Enhancers	Fetal Lung	lung
15	chr14:68841200-68845800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr14:68841400-68845200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:68841400-68845200	Enhancers	Rectal Smooth Muscle	rectum
18	chr14:68841400-68847200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr14:68841600-68845400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr14:68842000-68845200	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr14:68842000-68845200	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr14:68842000-68845800	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr14:68842200-68845200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr14:68842400-68845000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr14:68842400-68846400	Enhancers	Colon Smooth Muscle	Colon
26	chr14:68842400-68850400	Weak transcription	Pancreas	Pancrea
27	chr14:68842600-68845000	Enhancers	Primary hematopoietic stem cells	blood
28	chr14:68842600-68845200	Enhancers	Fetal Stomach	stomach
29	chr14:68842800-68845200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr14:68842800-68845200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr14:68843000-68845000	Enhancers	HepG2	liver
32	chr14:68843000-68845200	Enhancers	Brain Substantia Nigra	brain
33	chr14:68843000-68845200	Enhancers	Osteobl	bone
34	chr14:68843200-68845200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr14:68843200-68845400	Enhancers	Brain Angular Gyrus	brain
36	chr14:68843200-68846600	Enhancers	Primary T cells from cord blood	blood
37	chr14:68843400-68845200	Enhancers	Brain Cingulate Gyrus	brain
38	chr14:68843400-68845200	Enhancers	Brain Hippocampus Middle	brain
39	chr14:68843400-68850000	Weak transcription	Stomach Smooth Muscle	stomach
40	chr14:68843600-68845000	Enhancers	Fetal Intestine Small	intestine
41	chr14:68843600-68845200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr14:68843600-68845400	Enhancers	Brain Anterior Caudate	brain
43	chr14:68843600-68850600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr14:68843800-68845200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr14:68843800-68845200	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr14:68843800-68845200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr14:68843800-68847400	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr14:68844000-68844800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr14:68844000-68844800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr14:68844000-68845200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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