Variant report

Variant	rs10149278
Chromosome Location	chr14:68912014-68912015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68887949..68890328-chr14:68911065..68913436,2	MCF-7	breast:
2	chr14:68848862..68851704-chr14:68911488..68914021,2	MCF-7	breast:
3	chr14:68911957..68914084-chr14:69032259..69034812,2	MCF-7	breast:
4	chr14:68771399..68773960-chr14:68910018..68913627,3	MCF-7	breast:
5	chr14:68910903..68913112-chr14:69019388..69021979,2	MCF-7	breast:
6	chr14:68911921..68914411-chr14:69260879..69263149,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000258477	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10130220	0.90[AFR][1000 genomes]
rs10130623	0.92[ASN][1000 genomes]
rs10131303	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10133531	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10135443	0.88[ASN][1000 genomes]
rs10142381	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10144394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145082	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10145446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10151245	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11622203	1.00[CEU][hapmap]
rs11625077	0.88[ASN][1000 genomes]
rs11626013	0.88[ASN][1000 genomes]
rs11626015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846851	0.88[ASN][1000 genomes]
rs11850581	1.00[CEU][hapmap]
rs12323677	0.84[ASN][1000 genomes]
rs1570107	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17105573	1.00[CEU][hapmap]
rs17105601	1.00[JPT][hapmap]
rs17105664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28376370	0.88[ASN][1000 genomes]
rs28655994	0.88[ASN][1000 genomes]
rs3784127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60145217	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7142184	0.88[ASN][1000 genomes]
rs73276276	0.85[ASN][1000 genomes]
rs7359118	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68895200-68914400	Weak transcription	A549	lung
2	chr14:68906200-68912200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr14:68906800-68916000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:68908000-68913000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:68908600-68912200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr14:68908600-68917400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr14:68909000-68912600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:68909000-68916200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr14:68909600-68912200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr14:68909600-68912200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:68909600-68912200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr14:68909600-68912200	Enhancers	HSMMtube	muscle
13	chr14:68909600-68912200	Enhancers	Osteobl	bone
14	chr14:68909600-68912600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:68909600-68912800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:68909600-68915000	Enhancers	Dnd41	blood
17	chr14:68909800-68912400	Enhancers	HSMM	muscle
18	chr14:68910600-68912200	Enhancers	Adipose Nuclei	Adipose
19	chr14:68910800-68912200	Enhancers	Colon Smooth Muscle	Colon
20	chr14:68911000-68912200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr14:68911000-68912200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:68911200-68912200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr14:68911200-68912200	Enhancers	Stomach Smooth Muscle	stomach
24	chr14:68911400-68912200	Enhancers	Fetal Lung	lung
25	chr14:68911400-68915000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr14:68911600-68913400	Weak transcription	Placenta	Placenta
27	chr14:68911600-68914800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr14:68911600-68914800	Weak transcription	Small Intestine	intestine
29	chr14:68911800-68912800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:68911800-68913600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr14:68911800-68914000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr14:68911800-68916200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:68911800-68916200	Weak transcription	Brain Anterior Caudate	brain
34	chr14:68911800-68916200	Weak transcription	Fetal Muscle Trunk	muscle
35	chr14:68911800-68916200	Weak transcription	NH-A	brain
36	chr14:68911800-68917200	Weak transcription	Right Atrium	heart
37	chr14:68911800-68917600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr14:68911800-68921200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr14:68912000-68912200	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr14:68912000-68913000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr14:68912000-68913000	Weak transcription	Thymus	Thymus
42	chr14:68912000-68913000	Weak transcription	NHEK	skin
43	chr14:68912000-68913400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr14:68912000-68913600	Weak transcription	Liver	Liver
45	chr14:68912000-68913800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr14:68912000-68914400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr14:68912000-68914400	Weak transcription	Fetal Stomach	stomach
48	chr14:68912000-68914600	Weak transcription	Fetal Muscle Leg	muscle
49	chr14:68912000-68914800	Weak transcription	Stomach Mucosa	stomach
50	chr14:68912000-68914800	Weak transcription	NHLF	lung

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