Variant report

Variant	rs10135443
Chromosome Location	chr14:68897828-68897829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10130623	0.96[ASN][1000 genomes]
rs10131303	0.96[ASN][1000 genomes]
rs10133531	0.83[ASN][1000 genomes]
rs10142381	0.91[ASN][1000 genomes]
rs10144394	0.88[ASN][1000 genomes]
rs10145082	0.83[ASN][1000 genomes]
rs10145446	1.00[ASN][1000 genomes]
rs10149278	0.88[ASN][1000 genomes]
rs10151245	1.00[ASN][1000 genomes]
rs11625077	1.00[ASN][1000 genomes]
rs11626013	1.00[ASN][1000 genomes]
rs11626015	0.88[ASN][1000 genomes]
rs11846851	1.00[ASN][1000 genomes]
rs1570107	1.00[ASN][1000 genomes]
rs17105664	0.88[ASN][1000 genomes]
rs28376370	0.83[ASN][1000 genomes]
rs28655994	1.00[ASN][1000 genomes]
rs3784127	0.91[ASN][1000 genomes]
rs60145217	0.91[ASN][1000 genomes]
rs7142184	1.00[ASN][1000 genomes]
rs73276276	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68886600-68903200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68888000-68901000	Weak transcription	Primary T cells from cord blood	blood
3	chr14:68894200-68900800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:68895200-68914400	Weak transcription	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links