Variant report

Variant	rs7153929
Chromosome Location	chr14:77757743-77757744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77754082..77755889-chr14:77757491..77759643,2	MCF-7	breast:
2	chr14:77752243..77754429-chr14:77756635..77759049,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000009830	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10143655	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61442105	0.90[EUR][1000 genomes]
rs73311311	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73311328	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8015508	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77739600-77775600	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr14:77740200-77766800	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:77740200-77769800	Weak transcription	Small Intestine	intestine
4	chr14:77740400-77766000	Weak transcription	Stomach Mucosa	stomach
5	chr14:77740800-77758000	Strong transcription	Fetal Stomach	stomach
6	chr14:77740800-77766200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr14:77741000-77767400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr14:77741800-77758600	Strong transcription	Fetal Muscle Trunk	muscle
9	chr14:77741800-77773600	Weak transcription	GM12878-XiMat	blood
10	chr14:77742000-77766600	Strong transcription	Placenta	Placenta
11	chr14:77742200-77767600	Strong transcription	Stomach Smooth Muscle	stomach
12	chr14:77742400-77766400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr14:77742400-77766400	Strong transcription	Adipose Nuclei	Adipose
14	chr14:77742400-77780200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:77742600-77759400	Strong transcription	Brain Anterior Caudate	brain
16	chr14:77742600-77759600	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr14:77742600-77766600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:77743200-77760400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:77744000-77771400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr14:77744400-77760200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr14:77746600-77767200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr14:77746800-77762200	Weak transcription	Colonic Mucosa	Colon
23	chr14:77747200-77762000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:77748400-77759200	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr14:77749200-77766400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr14:77749400-77763000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr14:77749800-77757800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr14:77750000-77762000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr14:77750200-77767400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:77750800-77768000	Weak transcription	K562	blood
31	chr14:77751200-77764600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr14:77751400-77762600	Weak transcription	Hela-S3	cervix
33	chr14:77751400-77769200	Weak transcription	NHLF	lung
34	chr14:77751400-77769800	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr14:77751400-77775600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr14:77751400-77786200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr14:77751800-77762200	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr14:77751800-77767600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr14:77751800-77775600	Weak transcription	Thymus	Thymus
40	chr14:77752000-77761200	Weak transcription	Esophagus	oesophagus
41	chr14:77752000-77762200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr14:77752200-77762000	Weak transcription	Pancreas	Pancrea
43	chr14:77752200-77775600	Weak transcription	Fetal Thymus	thymus
44	chr14:77752400-77761200	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr14:77752600-77758600	Weak transcription	Psoas Muscle	Psoas
46	chr14:77752600-77762000	Weak transcription	HSMM	muscle
47	chr14:77752600-77773000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr14:77752600-77779200	Weak transcription	Fetal Heart	heart
49	chr14:77753000-77762200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr14:77753000-77764000	Weak transcription	Primary B cells from peripheral blood	blood

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