Variant report

Variant	rs7153979
Chromosome Location	chr14:81378061-81378062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10136404	0.84[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1016507	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1025253	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1035144	0.82[JPT][hapmap]
rs11623023	0.82[EUR][1000 genomes]
rs11623416	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11627019	0.85[ASN][1000 genomes]
rs11627929	0.87[ASN][1000 genomes]
rs12431821	1.00[CEU][hapmap];0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes]
rs12432357	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12434564	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12878945	0.95[JPT][hapmap]
rs12880014	0.87[CHB][hapmap]
rs12886388	0.83[EUR][1000 genomes]
rs12888082	1.00[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12891585	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs12892825	0.81[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12895801	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1458993	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17111270	0.81[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs172920	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17541411	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs17542615	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17542712	0.95[JPT][hapmap]
rs17613911	0.88[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs17614081	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1797670	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2044737	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2044738	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2114703	0.82[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2162548	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2215981	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs2217174	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2217176	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2246617	0.81[CHB][hapmap]
rs228110	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs228111	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs228112	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs228118	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs228120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs228121	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs228125	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2371416	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2371457	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2371462	0.81[CEU][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2556601	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2556605	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2590480	0.97[CHD][hapmap];0.85[TSI][hapmap]
rs2888046	0.80[CEU][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35540104	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3742721	0.81[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3742722	0.81[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4411444	0.82[JPT][hapmap]
rs4523859	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs4899782	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4899783	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4903948	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4903954	0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61979448	0.82[EUR][1000 genomes]
rs61979449	0.82[EUR][1000 genomes]
rs61979451	0.82[EUR][1000 genomes]
rs61979452	0.83[EUR][1000 genomes]
rs6574605	0.94[CHD][hapmap];0.86[TSI][hapmap]
rs6574613	0.88[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67065081	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7141130	0.86[EUR][1000 genomes]
rs7141434	0.88[CHB][hapmap];0.94[CHD][hapmap];0.81[JPT][hapmap];0.86[TSI][hapmap]
rs71416852	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7143407	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7143744	0.84[EUR][1000 genomes]
rs7148368	0.96[CEU][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.81[TSI][hapmap]
rs7148618	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7150858	0.89[CEU][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs7154132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7154373	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728444	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs759916	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs759917	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8003784	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8005883	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8006507	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8006864	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8009120	0.82[CEU][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8009260	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8016601	1.00[CEU][hapmap]
rs8021137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8022411	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81321600-81382200	Weak transcription	Left Ventricle	heart
2	chr14:81345200-81386200	Weak transcription	Aorta	Aorta
3	chr14:81351200-81380600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr14:81351400-81398400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:81351800-81380000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr14:81351800-81382000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:81355200-81384600	Weak transcription	Hela-S3	cervix
8	chr14:81356800-81381800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr14:81357800-81392600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr14:81358000-81380800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr14:81358000-81396600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr14:81358600-81381400	Weak transcription	Primary T cells from cord blood	blood
13	chr14:81358800-81379600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr14:81359200-81380600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:81359200-81389600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr14:81359400-81379800	Weak transcription	Adipose Nuclei	Adipose
17	chr14:81359400-81380000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:81359400-81380600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:81359400-81406000	Weak transcription	A549	lung
20	chr14:81359600-81381800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr14:81359800-81396200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr14:81359800-81407200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr14:81360000-81383400	Strong transcription	Dnd41	blood
24	chr14:81360200-81393800	Weak transcription	HMEC	breast
25	chr14:81362000-81384600	Weak transcription	HUVEC	blood vessel
26	chr14:81362200-81392600	Weak transcription	NH-A	brain
27	chr14:81362200-81392800	Weak transcription	Fetal Muscle Leg	muscle
28	chr14:81363400-81381800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr14:81363800-81391200	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr14:81364000-81381800	Weak transcription	Liver	Liver
31	chr14:81364400-81395800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr14:81364400-81395800	Weak transcription	GM12878-XiMat	blood
33	chr14:81364800-81379800	Weak transcription	Ovary	ovary
34	chr14:81365200-81393000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr14:81366200-81379800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr14:81366400-81382000	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr14:81367000-81381400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr14:81367200-81379400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr14:81369400-81389200	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr14:81369600-81397200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr14:81370000-81381800	Weak transcription	Primary B cells from cord blood	blood
42	chr14:81370400-81393600	Weak transcription	NHEK	skin
43	chr14:81370600-81381600	Weak transcription	Pancreas	Pancrea
44	chr14:81371400-81381200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr14:81371600-81392800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr14:81372000-81379600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr14:81372000-81392000	Weak transcription	Fetal Stomach	stomach
48	chr14:81372200-81381400	Weak transcription	Brain Germinal Matrix	brain
49	chr14:81372400-81381400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr14:81372800-81381800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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