Variant report

Variant	rs7150858
Chromosome Location	chr14:81280425-81280426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10136404	0.81[CEU][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap]
rs1016507	0.89[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs1025253	0.85[CEU][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap]
rs1035144	0.80[JPT][hapmap]
rs11623023	0.85[ASN][1000 genomes]
rs11623416	0.90[JPT][hapmap]
rs11625199	0.81[LWK][hapmap];0.86[YRI][hapmap]
rs12431821	0.88[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap];0.87[ASN][1000 genomes]
rs12432357	0.80[ASN][1000 genomes]
rs12434564	0.81[ASN][1000 genomes]
rs12437260	0.90[YRI][hapmap]
rs12878945	0.92[GIH][hapmap];0.95[JPT][hapmap]
rs12880014	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs12886388	0.87[ASN][1000 genomes]
rs12888082	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.80[ASN][1000 genomes]
rs12891585	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs12892825	0.85[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap]
rs12895801	0.90[JPT][hapmap]
rs1458993	0.89[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs170596	0.85[YRI][hapmap]
rs17111270	0.85[JPT][hapmap]
rs17542615	0.89[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs17542712	0.92[GIH][hapmap];0.95[JPT][hapmap]
rs17613911	0.89[CHB][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];0.80[JPT][hapmap];0.86[MEX][hapmap]
rs17614081	0.88[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs17615020	0.85[YRI][hapmap]
rs1863766	0.90[YRI][hapmap]
rs2010847	0.86[YRI][hapmap]
rs2044737	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2044738	0.80[ASN][1000 genomes]
rs2114703	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2215981	0.80[JPT][hapmap]
rs2217176	0.85[CEU][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap]
rs228120	0.88[CEU][hapmap];0.90[JPT][hapmap]
rs228122	0.89[YRI][hapmap]
rs228125	0.89[CEU][hapmap];0.88[JPT][hapmap]
rs2288347	0.81[LWK][hapmap];0.90[YRI][hapmap]
rs2371416	0.90[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2371457	0.85[CEU][hapmap];0.90[JPT][hapmap]
rs2371462	0.87[MEX][hapmap]
rs2556611	0.90[YRI][hapmap]
rs2590480	0.91[CHD][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap]
rs2888046	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs3742721	0.85[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap]
rs3742722	0.85[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap]
rs4411444	0.80[JPT][hapmap]
rs4523859	0.89[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap]
rs4899782	0.90[JPT][hapmap]
rs4903945	0.90[YRI][hapmap]
rs4903948	0.85[CEU][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap]
rs4903954	1.00[JPT][hapmap]
rs61979448	0.87[ASN][1000 genomes]
rs61979449	0.87[ASN][1000 genomes]
rs61979451	0.87[ASN][1000 genomes]
rs61979452	0.84[ASN][1000 genomes]
rs6574605	0.88[CHD][hapmap];0.87[MEX][hapmap]
rs6574610	0.86[YRI][hapmap]
rs6574613	0.82[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap]
rs66492142	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7141130	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7141434	0.89[CHB][hapmap];0.88[CHD][hapmap];0.80[JPT][hapmap]
rs71416852	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7148368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148618	0.88[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs7153979	0.89[CEU][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs7154132	0.88[CEU][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap]
rs759916	0.85[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap]
rs8003515	0.82[JPT][hapmap]
rs8003784	0.80[ASN][1000 genomes]
rs8006507	0.80[ASN][1000 genomes]
rs8006864	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8016601	0.91[CEU][hapmap]
rs8021137	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs8022411	0.85[CEU][hapmap];0.90[JPT][hapmap]
rs8022788	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7150858	C14orf145	cis	cerebellum	SCAN
rs7150858	VIPAR	cis	parietal	SCAN
rs7150858	C14orf145	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:81251800-81282600	Weak transcription	A549	lung
3	chr14:81265600-81284400	Weak transcription	Fetal Thymus	thymus
4	chr14:81267400-81284200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:81267400-81284800	Weak transcription	HSMM	muscle
6	chr14:81269600-81284400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:81272200-81284600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr14:81273400-81284400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr14:81275000-81282600	Weak transcription	Aorta	Aorta
10	chr14:81275200-81282800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:81275200-81283400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:81275200-81284000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:81275200-81284400	Weak transcription	Thymus	Thymus
14	chr14:81277600-81281000	Weak transcription	Dnd41	blood
15	chr14:81277600-81284600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr14:81279000-81284000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr14:81279200-81284400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:81280000-81284200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:81280200-81284600	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links