Variant report

Variant	rs8003515
Chromosome Location	chr14:81446242-81446243
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10145099	0.99[ASN][1000 genomes]
rs1023586	0.96[ASN][1000 genomes]
rs1035144	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11159479	0.97[ASN][1000 genomes]
rs12101255	0.96[ASN][1000 genomes]
rs12101261	0.96[ASN][1000 genomes]
rs12892825	0.82[JPT][hapmap]
rs17111346	0.96[ASN][1000 genomes]
rs179255	0.80[ASN][1000 genomes]
rs179262	0.84[ASN][1000 genomes]
rs179263	0.84[ASN][1000 genomes]
rs2114703	0.83[JPT][hapmap]
rs2160215	0.96[ASN][1000 genomes]
rs2215981	0.90[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs2268459	0.98[ASN][1000 genomes]
rs2284721	0.83[YRI][hapmap]
rs2284726	0.99[ASN][1000 genomes]
rs2300516	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2300517	0.83[YRI][hapmap]
rs2371463	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28414437	0.86[ASN][1000 genomes]
rs2888046	0.86[JPT][hapmap]
rs3742721	0.82[JPT][hapmap]
rs3742722	0.82[JPT][hapmap]
rs3783947	0.88[ASN][1000 genomes]
rs3783948	0.99[ASN][1000 genomes]
rs3783949	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3783950	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4411444	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4903954	0.89[JPT][hapmap]
rs4903961	0.96[ASN][1000 genomes]
rs56389234	0.98[ASN][1000 genomes]
rs6574617	0.97[ASN][1000 genomes]
rs7148368	0.82[JPT][hapmap]
rs7150858	0.82[JPT][hapmap]
rs724170	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8003061	0.96[ASN][1000 genomes]
rs8009120	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
3	nsv456346	chr14:81399692-81448382	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
4	nsv565291	chr14:81399692-81448382	Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81442200-81447600	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:81444000-81447800	Weak transcription	Aorta	Aorta
3	chr14:81444000-81447800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr14:81444800-81447800	Weak transcription	Placenta	Placenta
5	chr14:81444800-81447800	Weak transcription	Psoas Muscle	Psoas
6	chr14:81445000-81446600	Enhancers	Thymus	Thymus
7	chr14:81445000-81446800	Enhancers	Fetal Thymus	thymus
8	chr14:81445800-81447000	Enhancers	Dnd41	blood
9	chr14:81446000-81448000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:81446200-81446600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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