Variant report

Variant	rs724170
Chromosome Location	chr14:81457940-81457941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81456409..81459092-chr14:81684225..81686871,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10145099	0.97[ASN][1000 genomes]
rs1023586	0.96[ASN][1000 genomes]
rs1035144	0.92[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11159479	0.98[ASN][1000 genomes]
rs12101255	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12101261	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12323356	0.80[AMR][1000 genomes]
rs12892825	0.82[JPT][hapmap]
rs17111346	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs179262	0.82[ASN][1000 genomes]
rs179263	0.82[ASN][1000 genomes]
rs2114703	0.83[JPT][hapmap]
rs2160215	0.96[ASN][1000 genomes]
rs2215981	0.85[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2268459	0.99[ASN][1000 genomes]
rs2284726	0.96[ASN][1000 genomes]
rs2300516	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2300520	0.90[YRI][hapmap]
rs2371463	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28414437	0.87[ASN][1000 genomes]
rs2888046	0.86[JPT][hapmap]
rs3742721	0.82[JPT][hapmap]
rs3742722	0.82[JPT][hapmap]
rs3783947	0.88[ASN][1000 genomes]
rs3783948	0.96[ASN][1000 genomes]
rs3783949	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3783950	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4411444	0.93[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4903954	0.89[JPT][hapmap]
rs4903961	0.96[ASN][1000 genomes]
rs56389234	0.99[ASN][1000 genomes]
rs6574617	0.98[ASN][1000 genomes]
rs7148368	0.82[JPT][hapmap]
rs7150858	0.82[JPT][hapmap]
rs8003061	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs8003515	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8009120	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455400-81463800	Weak transcription	Thymus	Thymus
2	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
3	chr14:81456200-81459400	Weak transcription	Dnd41	blood
4	chr14:81457800-81458200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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