Variant report

Variant	rs179263
Chromosome Location	chr14:81442515-81442516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10136404	0.84[EUR][1000 genomes]
rs10145099	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1035144	0.94[ASN][1000 genomes]
rs11159479	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11623416	0.84[EUR][1000 genomes]
rs12101255	0.81[ASN][1000 genomes]
rs12101261	0.81[ASN][1000 genomes]
rs12895801	0.84[EUR][1000 genomes]
rs17111270	0.84[EUR][1000 genomes]
rs17111346	0.81[ASN][1000 genomes]
rs17111365	0.81[AMR][1000 genomes]
rs179246	0.87[ASN][1000 genomes]
rs179247	0.89[ASN][1000 genomes]
rs179248	0.90[ASN][1000 genomes]
rs179252	0.93[ASN][1000 genomes]
rs179255	0.95[ASN][1000 genomes]
rs179262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215981	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2268459	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2284726	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2300516	0.84[ASN][1000 genomes]
rs2371462	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2371463	0.82[ASN][1000 genomes]
rs3783943	0.80[AMR][1000 genomes]
rs3783948	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3783949	0.83[ASN][1000 genomes]
rs3783950	0.83[ASN][1000 genomes]
rs4411444	0.94[ASN][1000 genomes]
rs4899782	0.84[EUR][1000 genomes]
rs4899783	0.85[EUR][1000 genomes]
rs56389234	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6574613	0.81[EUR][1000 genomes]
rs6574617	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67065081	0.83[EUR][1000 genomes]
rs724170	0.82[ASN][1000 genomes]
rs8003061	0.81[ASN][1000 genomes]
rs8003515	0.84[ASN][1000 genomes]
rs8009120	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
3	nsv456346	chr14:81399692-81448382	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
4	nsv565291	chr14:81399692-81448382	Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81434000-81442600	Genic enhancers	Dnd41	blood
2	chr14:81440000-81443200	Enhancers	Adipose Nuclei	Adipose
3	chr14:81440600-81443800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr14:81440600-81444200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr14:81440600-81444600	Weak transcription	Primary T cells from cord blood	blood
6	chr14:81440800-81442600	Enhancers	Thymus	Thymus
7	chr14:81440800-81444600	Weak transcription	Fetal Muscle Leg	muscle
8	chr14:81441000-81443800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr14:81441400-81444400	Enhancers	Fetal Thymus	thymus
10	chr14:81441800-81444000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr14:81442000-81443000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:81442000-81443600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:81442000-81444200	Weak transcription	Fetal Brain Male	brain
14	chr14:81442000-81446000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr14:81442200-81444400	Weak transcription	Brain Germinal Matrix	brain
16	chr14:81442200-81444800	Weak transcription	Brain Anterior Caudate	brain
17	chr14:81442200-81446200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:81442200-81447600	Weak transcription	Colon Smooth Muscle	Colon
19	chr14:81442400-81442800	Weak transcription	Placenta	Placenta

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