Variant report

Variant	rs2284726
Chromosome Location	chr14:81454578-81454579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10136404	0.80[EUR][1000 genomes]
rs10145099	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1023586	0.94[ASN][1000 genomes]
rs1035144	0.88[ASN][1000 genomes]
rs11159479	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11623416	0.80[EUR][1000 genomes]
rs12101255	0.96[ASN][1000 genomes]
rs12101261	0.96[ASN][1000 genomes]
rs12895801	0.81[EUR][1000 genomes]
rs17111270	0.80[EUR][1000 genomes]
rs17111346	0.96[ASN][1000 genomes]
rs17111365	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs179255	0.80[ASN][1000 genomes]
rs179262	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs179263	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2160215	0.94[ASN][1000 genomes]
rs2215981	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2268459	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2300516	0.99[ASN][1000 genomes]
rs2371462	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2371463	0.96[ASN][1000 genomes]
rs28414437	0.85[ASN][1000 genomes]
rs3783943	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3783947	0.88[ASN][1000 genomes]
rs3783948	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3783949	0.99[ASN][1000 genomes]
rs3783950	0.99[ASN][1000 genomes]
rs4411444	0.88[ASN][1000 genomes]
rs4899782	0.80[EUR][1000 genomes]
rs4899783	0.81[EUR][1000 genomes]
rs4903961	0.94[ASN][1000 genomes]
rs56389234	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574617	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs724170	0.96[ASN][1000 genomes]
rs8003061	0.96[ASN][1000 genomes]
rs8003515	0.99[ASN][1000 genomes]
rs8009120	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81451000-81455400	Enhancers	Dnd41	blood
2	chr14:81452600-81454600	Weak transcription	Thymus	Thymus
3	chr14:81453400-81455600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr14:81453800-81455000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:81453800-81455000	Weak transcription	Osteobl	bone
6	chr14:81454000-81455000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:81454000-81455000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:81454400-81455200	Weak transcription	Fetal Thymus	thymus

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