Variant report

Variant	rs1023586
Chromosome Location	chr14:81462283-81462284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81461329..81464418-chr14:81684245..81687408,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10145099	0.95[ASN][1000 genomes]
rs1035144	0.85[ASN][1000 genomes]
rs11159479	0.96[ASN][1000 genomes]
rs12101255	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12101261	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17111346	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs179252	0.80[ASN][1000 genomes]
rs179255	0.82[ASN][1000 genomes]
rs2160215	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215981	0.85[ASN][1000 genomes]
rs2268459	0.96[ASN][1000 genomes]
rs2284726	0.94[ASN][1000 genomes]
rs2300516	0.96[ASN][1000 genomes]
rs2371463	0.96[ASN][1000 genomes]
rs28414437	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3783947	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3783948	0.94[ASN][1000 genomes]
rs3783949	0.95[ASN][1000 genomes]
rs3783950	0.95[ASN][1000 genomes]
rs4411444	0.85[ASN][1000 genomes]
rs4903961	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903964	0.80[EUR][1000 genomes]
rs55957493	0.80[EUR][1000 genomes]
rs55960644	0.80[EUR][1000 genomes]
rs56389234	0.96[ASN][1000 genomes]
rs58241131	0.80[EUR][1000 genomes]
rs58266067	0.80[EUR][1000 genomes]
rs58417382	0.80[EUR][1000 genomes]
rs60462373	0.80[EUR][1000 genomes]
rs6574617	0.96[ASN][1000 genomes]
rs7152373	0.80[EUR][1000 genomes]
rs724170	0.96[ASN][1000 genomes]
rs8003061	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8003515	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455400-81463800	Weak transcription	Thymus	Thymus
2	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
3	chr14:81459400-81465600	Strong transcription	Dnd41	blood
4	chr14:81459800-81462400	Weak transcription	Liver	Liver
5	chr14:81460600-81462600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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