Variant report

Variant	rs56389234
Chromosome Location	chr14:81461616-81461617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81461329..81464418-chr14:81684245..81687408,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10145099	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1023586	0.96[ASN][1000 genomes]
rs1035144	0.87[ASN][1000 genomes]
rs11159479	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12101255	0.94[ASN][1000 genomes]
rs12101261	0.94[ASN][1000 genomes]
rs17111346	0.94[ASN][1000 genomes]
rs17111365	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs179262	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs179263	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2160215	0.96[ASN][1000 genomes]
rs2215981	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2268459	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2284726	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2300516	0.98[ASN][1000 genomes]
rs2371462	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2371463	0.99[ASN][1000 genomes]
rs28414437	0.86[ASN][1000 genomes]
rs3783943	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3783947	0.86[ASN][1000 genomes]
rs3783948	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3783949	0.97[ASN][1000 genomes]
rs3783950	0.97[ASN][1000 genomes]
rs4411444	0.87[ASN][1000 genomes]
rs4903961	0.96[ASN][1000 genomes]
rs6574617	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs724170	0.99[ASN][1000 genomes]
rs8003061	0.94[ASN][1000 genomes]
rs8003515	0.98[ASN][1000 genomes]
rs8009120	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455400-81463800	Weak transcription	Thymus	Thymus
2	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
3	chr14:81459400-81465600	Strong transcription	Dnd41	blood
4	chr14:81459800-81462400	Weak transcription	Liver	Liver
5	chr14:81460600-81462600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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