Variant report
| Variant | rs179255 |
|---|---|
| Chromosome Location | chr14:81437602-81437603 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10145099 | 0.81[ASN][1000 genomes] |
| rs1023586 | 0.82[ASN][1000 genomes] |
| rs1035144 | 0.83[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs12101255 | 0.82[ASN][1000 genomes] |
| rs12101261 | 0.82[ASN][1000 genomes] |
| rs12878945 | 0.81[JPT][hapmap] |
| rs17111270 | 0.81[JPT][hapmap] |
| rs17111346 | 0.82[ASN][1000 genomes] |
| rs17542712 | 0.81[JPT][hapmap] |
| rs179246 | 0.92[ASN][1000 genomes] |
| rs179247 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs179248 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs179252 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs179262 | 0.95[ASN][1000 genomes] |
| rs179263 | 0.95[ASN][1000 genomes] |
| rs2160215 | 0.82[ASN][1000 genomes] |
| rs2215981 | 0.83[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.91[ASN][1000 genomes] |
| rs2284726 | 0.80[ASN][1000 genomes] |
| rs2300516 | 0.81[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs2371462 | 1.00[CHB][hapmap];0.81[JPT][hapmap] |
| rs2888046 | 0.80[JPT][hapmap] |
| rs3783948 | 0.80[ASN][1000 genomes] |
| rs3783949 | 0.81[JPT][hapmap] |
| rs3783950 | 0.81[JPT][hapmap] |
| rs4411444 | 0.84[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs4903954 | 0.83[JPT][hapmap] |
| rs4903961 | 0.82[ASN][1000 genomes] |
| rs8003061 | 0.82[ASN][1000 genomes] |
| rs8003515 | 0.86[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs8009120 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869348 | chr14:80921098-81535754 | Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | esv2761847 | chr14:81392124-81453137 | Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | n/a |
| 3 | nsv456346 | chr14:81399692-81448382 | Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | n/a |
| 4 | nsv565291 | chr14:81399692-81448382 | Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:81434000-81442600 | Genic enhancers | Dnd41 | blood |
| 2 | chr14:81436200-81440200 | Enhancers | Thymus | Thymus |
| 3 | chr14:81436600-81440400 | Enhancers | Fetal Thymus | thymus |
