Variant report

Variant	rs71554536
Chromosome Location	chr6:15725485-15725486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15718712..15722116-chr6:15722566..15727072,4	K562	blood:
2	chr6:15723984..15726678-chr6:15729144..15731299,3	MCF-7	breast:
3	chr6:15722743..15725547-chr6:16128093..16130865,2	K562	blood:
4	chr6:15711716..15714538-chr6:15724011..15725713,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTNBP1-7	chr6:15725264-15726229	NONHSAT107877

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11963843	0.84[EUR][1000 genomes]
rs13192922	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13199598	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13206289	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13206437	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13207538	0.81[EUR][1000 genomes]
rs13213868	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13213990	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13217270	0.81[AMR][1000 genomes]
rs17407828	0.80[EUR][1000 genomes]
rs17408240	0.84[EUR][1000 genomes]
rs17473363	0.81[EUR][1000 genomes]
rs17473553	0.82[EUR][1000 genomes]
rs17473769	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17473810	0.82[EUR][1000 genomes]
rs17473838	0.84[EUR][1000 genomes]
rs17473930	0.88[EUR][1000 genomes]
rs34297195	0.87[EUR][1000 genomes]
rs34303993	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34872116	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35510319	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35513974	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57292248	0.84[EUR][1000 genomes]
rs61568456	0.84[EUR][1000 genomes]
rs67330366	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67370907	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6906528	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6917701	0.86[EUR][1000 genomes]
rs6921842	0.85[EUR][1000 genomes]
rs6922764	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6922963	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6937887	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6941398	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71554534	0.85[EUR][1000 genomes]
rs7741874	0.82[EUR][1000 genomes]
rs7759904	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7763446	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7763614	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs977746	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15721200-15736200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:15725200-15725800	Enhancers	K562	blood

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