Variant report

Variant	rs13206437
Chromosome Location	chr6:15701466-15701467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15699837..15703207-chr6:16128795..16131066,3	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11963843	0.89[EUR][1000 genomes]
rs13192922	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13199598	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13206289	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13207538	0.93[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13213868	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13213990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17407828	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs17408240	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs17473363	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17473553	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs17473769	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17473810	0.88[EUR][1000 genomes]
rs17473838	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs17473930	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34297195	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34303993	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34872116	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35510319	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35513974	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57292248	0.89[EUR][1000 genomes]
rs61568456	0.89[EUR][1000 genomes]
rs67330366	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67370907	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6906528	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6917701	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6921842	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6922764	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6922963	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6937887	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6941398	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71554534	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71554536	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7741874	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs7759904	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7763446	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7763614	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs977746	0.95[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2607475	chr6:15664805-15717086	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2757157	chr6:15668867-15725478	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759408	chr6:15668867-15725478	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv433377	chr6:15686225-15713759	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv33801	chr6:15696893-15710520	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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