Variant report

Variant	rs71558719
Chromosome Location	chr7:83846574-83846575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10229639	0.93[EUR][1000 genomes]
rs11971977	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11976214	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11976275	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12707623	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12707624	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12707625	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12707626	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12707627	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13224698	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13230138	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13231088	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13231114	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13231702	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13234305	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13242741	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1557936	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28464975	0.93[EUR][1000 genomes]
rs34054916	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34183115	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34231292	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34406409	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34445481	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34446199	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34586908	0.93[EUR][1000 genomes]
rs34753507	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34798940	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34843693	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34998443	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35088033	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35157722	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35192141	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35241002	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35276675	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35473465	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35732081	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35743946	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35815557	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35912238	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35929386	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35947091	0.93[EUR][1000 genomes]
rs36005262	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36075153	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71522694	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71558711	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71558712	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71558713	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71558715	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71558716	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7784725	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7811968	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv888629	chr7:83722691-83896025	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83845200-83846600	Enhancers	Fetal Heart	heart
2	chr7:83845800-83847200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:83846200-83846800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:83846200-83846800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:83846200-83847000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr7:83846200-83848600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:83846400-83847200	Enhancers	HUES48 Cell Line	embryonic stem cell

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