Variant report

Variant	rs7784725
Chromosome Location	chr7:83840753-83840754
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:83836807..83838532-chr7:83840075..83842116,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10229639	0.90[EUR][1000 genomes]
rs11971977	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11976214	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11976275	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12707623	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12707624	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12707625	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12707626	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12707627	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13224698	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13230138	0.92[AMR][1000 genomes]
rs13231088	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13231114	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13231702	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13234305	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13242741	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1557936	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28464975	0.90[EUR][1000 genomes]
rs34054916	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34183115	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34231292	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34406409	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34445481	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34446199	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34586908	0.90[EUR][1000 genomes]
rs34753507	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34798940	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34843693	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34998443	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35088033	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35157722	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35192141	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35241002	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35276675	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35473465	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35732081	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35743946	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35815557	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35912238	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35929386	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35947091	0.90[EUR][1000 genomes]
rs36005262	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36075153	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71522694	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71558711	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71558712	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71558713	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71558715	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71558716	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71558719	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7811968	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv888629	chr7:83722691-83896025	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83825800-83841200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:83838200-83841000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:83838200-83846400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:83840000-83841200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:83840000-83846200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links