Variant report

Variant	rs71565065
Chromosome Location	chr6:80703782-80703783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11446289	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13190687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13194041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13195312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13197924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13198886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13207785	1.00[AMR][1000 genomes]
rs13210539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13211239	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13216126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13219055	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2230513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34038612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34239525	1.00[AMR][1000 genomes]
rs34566095	1.00[AMR][1000 genomes]
rs34666876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35213475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35302124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36122081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71539129	1.00[AMR][1000 genomes]
rs71565063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71565064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71565067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80702200-80704000	Enhancers	H9 Cell Line	embryonic stem cell
2	chr6:80702400-80704400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:80702600-80704200	Enhancers	Fetal Thymus	thymus
4	chr6:80702600-80704400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:80702600-80704400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:80702600-80705000	Enhancers	Thymus	Thymus
7	chr6:80703200-80703800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr6:80703400-80704200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:80703600-80703800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:80703600-80703800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:80703600-80703800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:80703600-80704000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr6:80703600-80704400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:80703600-80704400	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links