Variant report

Variant	rs7157209
Chromosome Location	chr14:56602704-56602705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56597393..56599365-chr14:56602451..56604524,3	K562	blood:
2	chr14:56602302..56604892-chr14:56607961..56609487,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17689164	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2147538	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs7146021	1.00[YRI][hapmap]
rs8018548	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1844788	chr14:56594420-56771207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56593200-56612800	Weak transcription	Brain Angular Gyrus	brain
2	chr14:56595600-56607000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr14:56596600-56603600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:56596600-56615000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:56596800-56603600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr14:56596800-56604000	Weak transcription	Right Ventricle	heart
7	chr14:56596800-56604200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr14:56597000-56603400	Weak transcription	Spleen	Spleen
9	chr14:56597000-56611800	Weak transcription	Lung	lung
10	chr14:56597200-56604000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr14:56597200-56605600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:56597200-56607200	Enhancers	Dnd41	blood
13	chr14:56598200-56606600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr14:56598400-56604200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr14:56599000-56604600	Weak transcription	Brain Anterior Caudate	brain
16	chr14:56599200-56603400	Weak transcription	Primary B cells from cord blood	blood
17	chr14:56599200-56604000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr14:56599200-56606600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr14:56599400-56603000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr14:56599400-56604200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:56599400-56604200	Weak transcription	Brain Hippocampus Middle	brain
22	chr14:56599400-56614800	Weak transcription	Brain Substantia Nigra	brain
23	chr14:56599400-56615000	Weak transcription	Left Ventricle	heart
24	chr14:56599600-56604000	Weak transcription	Adipose Nuclei	Adipose
25	chr14:56599600-56605600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr14:56600000-56607800	Enhancers	Primary hematopoietic stem cells	blood
27	chr14:56600200-56603400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr14:56600400-56603400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr14:56600400-56604200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr14:56600400-56605400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr14:56600400-56606800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr14:56600600-56603400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr14:56600600-56603400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr14:56600600-56603400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr14:56600600-56603400	Weak transcription	Fetal Brain Female	brain
36	chr14:56600600-56603600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr14:56600600-56603600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr14:56600600-56603600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr14:56600600-56604000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr14:56600600-56604000	Weak transcription	Fetal Thymus	thymus
41	chr14:56600600-56604200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr14:56600600-56604600	Weak transcription	Thymus	Thymus
43	chr14:56600600-56605800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr14:56600600-56605800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr14:56600600-56608400	Weak transcription	Gastric	stomach
46	chr14:56600600-56615000	Weak transcription	Right Atrium	heart
47	chr14:56600800-56603600	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr14:56600800-56603600	Weak transcription	Pancreas	Pancrea
49	chr14:56601000-56603600	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr14:56601000-56607800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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