Variant report

Variant	rs8018548
Chromosome Location	chr14:56641653-56641654
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7146021	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147332	1.00[AMR][1000 genomes]
rs7157209	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1844788	chr14:56594420-56771207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56627200-56645000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:56633800-56645000	Weak transcription	Primary B cells from cord blood	blood
3	chr14:56634400-56644200	Enhancers	Pancreas	Pancrea
4	chr14:56635000-56654600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:56635600-56647200	Weak transcription	Ovary	ovary
6	chr14:56635800-56643800	Weak transcription	Fetal Brain Female	brain
7	chr14:56638400-56644200	Enhancers	Primary hematopoietic stem cells	blood
8	chr14:56639000-56645000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr14:56639200-56643000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr14:56639200-56643200	Weak transcription	Spleen	Spleen
11	chr14:56639200-56645000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr14:56639200-56647200	Weak transcription	Left Ventricle	heart
13	chr14:56639200-56662000	Weak transcription	Right Ventricle	heart
14	chr14:56639400-56641800	Weak transcription	Gastric	stomach
15	chr14:56639400-56643800	Weak transcription	Psoas Muscle	Psoas
16	chr14:56639400-56645000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr14:56639400-56652800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr14:56639400-56659200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:56639600-56641800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr14:56639600-56642000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr14:56639600-56642600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:56639800-56641800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr14:56639800-56643200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr14:56639800-56643600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr14:56639800-56645000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr14:56639800-56647400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:56639800-56647400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr14:56639800-56647400	Weak transcription	Aorta	Aorta
29	chr14:56640000-56642600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr14:56640000-56643200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr14:56640000-56643400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr14:56640000-56643800	Weak transcription	Brain Hippocampus Middle	brain
33	chr14:56640000-56646800	Weak transcription	Adipose Nuclei	Adipose
34	chr14:56640000-56647600	Weak transcription	K562	blood
35	chr14:56640000-56648800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr14:56640000-56652400	Weak transcription	Brain Substantia Nigra	brain
37	chr14:56640000-56652600	Weak transcription	Brain Anterior Caudate	brain
38	chr14:56640000-56652800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr14:56640000-56659800	Weak transcription	Fetal Intestine Large	intestine
40	chr14:56640000-56661800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr14:56640200-56642400	Weak transcription	Fetal Intestine Small	intestine
42	chr14:56640200-56644200	Enhancers	Fetal Thymus	thymus
43	chr14:56640200-56647600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr14:56640200-56648000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr14:56640400-56641800	Weak transcription	Stomach Mucosa	stomach
46	chr14:56640400-56644400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr14:56640400-56645200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:56640400-56649600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr14:56640400-56661000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr14:56640600-56642200	Weak transcription	Fetal Stomach	stomach

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