Variant report

Variant	rs7157271
Chromosome Location	chr14:39684613-39684614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10136285	0.96[ASN][1000 genomes]
rs10136309	0.96[ASN][1000 genomes]
rs10138869	0.95[ASN][1000 genomes]
rs2093216	0.95[EUR][1000 genomes]
rs6571906	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7140164	0.97[ASN][1000 genomes]
rs7143393	0.96[ASN][1000 genomes]
rs7145048	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7145343	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7145345	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7146289	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7151608	1.00[CEU][hapmap];0.92[GIH][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs7151610	0.96[EUR][1000 genomes]
rs7153482	1.00[CEU][hapmap];0.88[GIH][hapmap];0.95[TSI][hapmap]
rs7160180	0.96[ASN][1000 genomes]
rs72673365	0.96[EUR][1000 genomes]
rs74048717	0.96[ASN][1000 genomes]
rs8009490	0.94[ASN][1000 genomes]
rs8011619	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1246	chr14:39656597-39701520	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39674000-39705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:39681600-39686600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:39681800-39686400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:39681800-39686400	Weak transcription	HUVEC	blood vessel
5	chr14:39682000-39685200	Weak transcription	Hela-S3	cervix
6	chr14:39682000-39686400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:39682000-39686400	Weak transcription	A549	lung
8	chr14:39682000-39686400	Weak transcription	HMEC	breast
9	chr14:39682000-39686400	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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