Variant report

Variant	rs7160180
Chromosome Location	chr14:39681903-39681904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10136285	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136309	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138869	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10149495	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2093217	0.99[EUR][1000 genomes]
rs6571906	0.97[ASN][1000 genomes]
rs7140164	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7143393	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145048	0.95[ASN][1000 genomes]
rs7145343	0.97[ASN][1000 genomes]
rs7145345	0.97[ASN][1000 genomes]
rs7146289	0.97[ASN][1000 genomes]
rs7156264	0.99[EUR][1000 genomes]
rs7157271	0.96[ASN][1000 genomes]
rs74048714	0.99[EUR][1000 genomes]
rs74048717	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009490	0.95[ASN][1000 genomes]
rs8011619	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1246	chr14:39656597-39701520	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39674000-39705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:39679800-39682000	Enhancers	A549	lung
3	chr14:39680400-39682400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr14:39681000-39682000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:39681000-39682000	Enhancers	Hela-S3	cervix
6	chr14:39681000-39682000	Enhancers	HMEC	breast
7	chr14:39681400-39682000	Enhancers	NHEK	skin
8	chr14:39681600-39686600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:39681800-39684600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:39681800-39686400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:39681800-39686400	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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