Variant report

Variant	rs7157974
Chromosome Location	chr14:105998758-105998759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105993630..105997009-chr14:105997859..106001918,6	K562	blood:
2	chr14:105955131..105957877-chr14:105998324..106001046,2	MCF-7	breast:
3	chr14:105995043..105996961-chr14:105997844..106000357,2	MCF-7	breast:
4	chr14:105997452..106000528-chr14:106001477..106004832,5	MCF-7	breast:
5	chr14:105939120..105941680-chr14:105997309..106000021,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM121-1	chr14:105998192-105998856	NONHSAT040375

No data

Variant related genes	Relation type
ENSG00000182809	Chromatin interaction
ENSG00000230157	Chromatin interaction
ENSG00000185347	Chromatin interaction
ENSG00000184986	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10135326	1.00[MEX][hapmap]
rs57676263	1.00[AMR][1000 genomes]
rs7157999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158619	0.89[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7157974	SH2D1A	trans	lymphoblastoid	seeQTL
rs7157974	INF2	cis	lymphoblastoid	seeQTL

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105994000-105999400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:105994800-105998800	Weak transcription	HSMMtube	muscle
3	chr14:105994800-105999000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr14:105994800-106001400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:105995200-105998800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:105995400-106004200	Weak transcription	Brain Substantia Nigra	brain
7	chr14:105995600-105998800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:105995600-105999000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:105996000-105998800	Weak transcription	Brain Angular Gyrus	brain
10	chr14:105996000-106000000	Enhancers	Primary B cells from cord blood	blood
11	chr14:105996000-106000000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr14:105996000-106000200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr14:105996000-106000200	Enhancers	Primary B cells from peripheral blood	blood
14	chr14:105996000-106004000	Weak transcription	Pancreas	Pancrea
15	chr14:105996200-106004400	Weak transcription	Right Atrium	heart
16	chr14:105996400-105999200	Strong transcription	Fetal Brain Female	brain
17	chr14:105996600-105999000	Weak transcription	GM12878-XiMat	blood
18	chr14:105996600-106004400	Weak transcription	Liver	Liver
19	chr14:105996800-105999800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr14:105996800-106004000	Weak transcription	Fetal Brain Male	brain
21	chr14:105997000-105999200	Enhancers	Spleen	Spleen
22	chr14:105997000-106000200	Weak transcription	Fetal Lung	lung
23	chr14:105997200-105998800	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr14:105997400-105999200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr14:105997400-106000600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:105997400-106001000	Weak transcription	Brain Hippocampus Middle	brain
27	chr14:105997400-106001600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr14:105997400-106004200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr14:105997600-106000200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr14:105997600-106000400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr14:105997800-105999800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr14:105998200-106004400	Weak transcription	Brain Germinal Matrix	brain
33	chr14:105998400-105999200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
34	chr14:105998600-106000200	Bivalent Enhancer	HepG2	liver

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