Variant report

Variant	rs7157999
Chromosome Location	chr14:105998813-105998814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105993630..105997009-chr14:105997859..106001918,6	K562	blood:
2	chr14:105955131..105957877-chr14:105998324..106001046,2	MCF-7	breast:
3	chr14:105995043..105996961-chr14:105997844..106000357,2	MCF-7	breast:
4	chr14:105997452..106000528-chr14:106001477..106004832,5	MCF-7	breast:
5	chr14:105939120..105941680-chr14:105997309..106000021,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM121-1	chr14:105998192-105998856	NONHSAT040375

No data

Variant related genes	Relation type
ENSG00000182809	Chromatin interaction
ENSG00000230157	Chromatin interaction
ENSG00000184986	Chromatin interaction
ENSG00000185347	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57676263	1.00[AMR][1000 genomes]
rs7157974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105994000-105999400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:105994800-105999000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr14:105994800-106001400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:105995400-106004200	Weak transcription	Brain Substantia Nigra	brain
5	chr14:105995600-105999000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:105996000-106000000	Enhancers	Primary B cells from cord blood	blood
7	chr14:105996000-106000000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr14:105996000-106000200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr14:105996000-106000200	Enhancers	Primary B cells from peripheral blood	blood
10	chr14:105996000-106004000	Weak transcription	Pancreas	Pancrea
11	chr14:105996200-106004400	Weak transcription	Right Atrium	heart
12	chr14:105996400-105999200	Strong transcription	Fetal Brain Female	brain
13	chr14:105996600-105999000	Weak transcription	GM12878-XiMat	blood
14	chr14:105996600-106004400	Weak transcription	Liver	Liver
15	chr14:105996800-105999800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr14:105996800-106004000	Weak transcription	Fetal Brain Male	brain
17	chr14:105997000-105999200	Enhancers	Spleen	Spleen
18	chr14:105997000-106000200	Weak transcription	Fetal Lung	lung
19	chr14:105997400-105999200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr14:105997400-106000600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:105997400-106001000	Weak transcription	Brain Hippocampus Middle	brain
22	chr14:105997400-106001600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr14:105997400-106004200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr14:105997600-106000200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr14:105997600-106000400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr14:105997800-105999800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:105998200-106004400	Weak transcription	Brain Germinal Matrix	brain
28	chr14:105998400-105999200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
29	chr14:105998600-106000200	Bivalent Enhancer	HepG2	liver
30	chr14:105998800-105999000	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr14:105998800-105999200	Enhancers	HSMMtube	muscle
32	chr14:105998800-105999600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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