Variant report

Variant	rs7158479
Chromosome Location	chr14:105552083-105552084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105550667..105552367-chr14:105554467..105556280,2	K562	blood:
2	chr14:105444537..105448423-chr14:105550882..105555382,4	MCF-7	breast:
3	chr14:105440744..105442653-chr14:105551168..105553091,2	MCF-7	breast:
4	chr14:105541634..105546414-chr14:105550039..105556215,6	MCF-7	breast:
5	chr14:105550862..105553369-chr14:105650448..105653112,3	MCF-7	breast:
6	chr14:105539179..105546592-chr14:105547833..105554421,6	K562	blood:
7	chr14:105551472..105556224-chr14:105557135..105561197,4	K562	blood:
8	chr14:105441542..105446524-chr14:105551776..105555830,4	K562	blood:
9	chr14:105441376..105443921-chr14:105550710..105553221,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000257556	Chromatin interaction
ENSG00000185567	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10129625	0.81[ASN][1000 genomes]
rs10130501	0.83[ASN][1000 genomes]
rs10130930	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11621606	0.86[AMR][1000 genomes]
rs11627133	0.90[CHD][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap]
rs12433746	0.90[CHB][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap]
rs12435117	0.83[ASN][1000 genomes]
rs12885313	0.81[ASN][1000 genomes]
rs12885315	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12885324	0.81[ASN][1000 genomes]
rs12886677	0.81[ASN][1000 genomes]
rs12889428	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs12895274	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12896149	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34235655	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35133619	0.85[AMR][1000 genomes]
rs36171475	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3809466	0.90[CHB][hapmap]
rs3809470	0.90[CHB][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap]
rs4288933	1.00[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap]
rs4357873	0.81[ASN][1000 genomes]
rs4377097	0.83[AMR][1000 genomes]
rs4464021	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4581644	0.80[AMR][1000 genomes]
rs55780149	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56069762	0.83[AMR][1000 genomes]
rs6576074	0.82[AMR][1000 genomes]
rs7144647	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs7147669	1.00[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap]
rs7150778	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7152235	0.90[CHB][hapmap]
rs7155121	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7156642	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7156965	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7157567	1.00[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap]
rs7157947	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7158905	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7159054	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7160811	0.89[CHB][hapmap];0.87[CHD][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7161438	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8003024	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8003920	0.81[ASN][1000 genomes]
rs8004326	0.81[ASN][1000 genomes]
rs8006160	0.82[AMR][1000 genomes]
rs8015942	0.89[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];0.93[JPT][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8018607	0.83[ASW][hapmap];0.82[GIH][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes]
rs9743945	0.89[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv542227	chr14:105157572-105803170	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
4	nsv917106	chr14:105339195-105803170	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
5	nsv456457	chr14:105404384-105555396	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
6	nsv566141	chr14:105404384-105555396	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
7	nsv902421	chr14:105410183-105574843	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
8	nsv902422	chr14:105420215-105803170	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
9	nsv1052190	chr14:105423761-105722653	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
10	nsv902423	chr14:105430890-105803170	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
11	nsv1042303	chr14:105435649-105633544	Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
12	nsv456458	chr14:105435649-105690092	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
13	nsv566150	chr14:105435649-105690092	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
14	nsv902424	chr14:105436222-105803170	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
15	nsv566151	chr14:105459140-105555396	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
16	nsv456459	chr14:105459140-105617891	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
17	nsv566152	chr14:105459140-105617891	Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
18	nsv902425	chr14:105463936-105690092	Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
19	nsv9175	chr14:105496509-105688941	Enhancers Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
20	nsv902427	chr14:105508577-105585347	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
21	esv2758369	chr14:105513346-105803170	Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
22	esv2760014	chr14:105513346-105803170	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
23	nsv902428	chr14:105531945-105555396	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7158479	TRMT61A	cis	parietal	SCAN
rs7158479	NUDT14	cis	parietal	SCAN
rs7158479	AHNAK2	cis	cerebellum	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105542400-105553400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:105544400-105553000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:105546800-105553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:105547800-105553000	Weak transcription	Esophagus	oesophagus
5	chr14:105550800-105552400	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr14:105550800-105553000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr14:105551200-105553000	Enhancers	Right Ventricle	heart
8	chr14:105551400-105552800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:105551400-105552800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr14:105551400-105552800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:105551400-105553000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:105551400-105553000	Enhancers	Adipose Nuclei	Adipose
13	chr14:105551400-105553000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr14:105551400-105553000	Enhancers	GM12878-XiMat	blood
15	chr14:105551600-105552200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:105551600-105559000	Enhancers	Placenta	Placenta
17	chr14:105551800-105552200	Weak transcription	Spleen	Spleen
18	chr14:105551800-105553000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr14:105551800-105553000	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr14:105552000-105552200	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
21	chr14:105552000-105552200	Enhancers	Osteobl	bone
22	chr14:105552000-105552600	Flanking Active TSS	A549	lung
23	chr14:105552000-105553000	Enhancers	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links