Variant report

Variant	rs715863
Chromosome Location	chr20:24525848-24525849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs6036832	0.88[ASN][1000 genomes]
rs6049765	0.84[ASN][1000 genomes]
rs6049768	0.88[ASN][1000 genomes]
rs6049771	0.89[ASN][1000 genomes]
rs6049775	0.86[ASN][1000 genomes]
rs6114768	0.86[ASN][1000 genomes]
rs6132744	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6138318	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6138319	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24517200-24526600	Weak transcription	Brain Substantia Nigra	brain
2	chr20:24517200-24526800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr20:24521200-24528400	Weak transcription	HMEC	breast
4	chr20:24522400-24526800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr20:24522800-24526600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr20:24522800-24528400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr20:24523000-24528200	Weak transcription	Brain Anterior Caudate	brain
8	chr20:24523400-24527600	Weak transcription	Fetal Brain Female	brain
9	chr20:24523600-24526800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr20:24523600-24530800	Weak transcription	Fetal Heart	heart
11	chr20:24523800-24528800	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr20:24523800-24528800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr20:24524200-24526800	Strong transcription	Brain Angular Gyrus	brain
14	chr20:24524800-24526000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr20:24524800-24526400	Enhancers	Fetal Muscle Leg	muscle
16	chr20:24525000-24526200	Enhancers	Right Ventricle	heart
17	chr20:24525000-24526600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr20:24525000-24527000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr20:24525000-24527000	Strong transcription	Brain Hippocampus Middle	brain
20	chr20:24525000-24528600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr20:24525200-24526600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr20:24525400-24541800	Weak transcription	Left Ventricle	heart
23	chr20:24525600-24526400	Enhancers	Right Atrium	heart
24	chr20:24525600-24526600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr20:24525800-24526200	ZNF genes & repeats	Fetal Stomach	stomach

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