Variant report

Variant	rs7159698
Chromosome Location	chr14:35159805-35159806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs7151346	0.82[AFR][1000 genomes]
rs7156526	1.00[AFR][1000 genomes]
rs7160935	0.88[AFR][1000 genomes]
rs9672104	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv1038792	chr14:35108080-35160860	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1053843	chr14:35110120-35167640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv542028	chr14:35110120-35167640	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1049026	chr14:35110285-35160860	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv564199	chr14:35135186-35167362	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35148000-35161600	Weak transcription	A549	lung
2	chr14:35152600-35162400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:35152800-35161400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr14:35155400-35162200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr14:35155600-35162600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:35155800-35162400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:35156000-35162400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:35158000-35161800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr14:35158400-35160600	Enhancers	Liver	Liver
10	chr14:35158400-35161600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:35158400-35162400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr14:35158400-35162600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr14:35158400-35162600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr14:35158600-35162400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr14:35158800-35162400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr14:35159600-35160000	Flanking Active TSS	HepG2	liver
17	chr14:35159600-35161800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr14:35159800-35162400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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