Variant report

Variant	rs7160935
Chromosome Location	chr14:35170111-35170112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35150230..35152765-chr14:35168085..35171120,3	MCF-7	breast:
2	chr14:35169772..35172224-chr14:35172922..35177052,4	MCF-7	breast:
3	chr14:35167435..35171641-chr14:35181383..35185055,7	MCF-7	breast:
4	chr14:35169173..35171973-chr14:35214224..35216870,2	MCF-7	breast:
5	chr14:35167927..35170962-chr14:35182528..35184538,4	MCF-7	breast:
6	chr14:35160284..35162181-chr14:35169145..35171749,2	MCF-7	breast:
7	chr14:35150005..35152867-chr14:35168615..35170921,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165410	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10150788	0.92[YRI][hapmap]
rs11847490	0.92[YRI][hapmap]
rs7144947	0.92[YRI][hapmap]
rs7156526	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7159698	0.88[AFR][1000 genomes]
rs8006996	1.00[YRI][hapmap]
rs8020967	1.00[YRI][hapmap]
rs9672104	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35163200-35171800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:35168800-35170200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:35168800-35170200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:35168800-35170200	Enhancers	Brain Substantia Nigra	brain
5	chr14:35168800-35170200	Enhancers	HMEC	breast
6	chr14:35168800-35170200	Flanking Active TSS	NH-A	brain
7	chr14:35168800-35170400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:35168800-35170400	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr14:35168800-35170400	Enhancers	HSMM	muscle
10	chr14:35168800-35170400	Enhancers	HSMMtube	muscle
11	chr14:35168800-35170600	Enhancers	NHEK	skin
12	chr14:35168800-35171400	Enhancers	HepG2	liver
13	chr14:35168800-35171600	Enhancers	HUVEC	blood vessel
14	chr14:35169000-35170200	Enhancers	Brain Anterior Caudate	brain
15	chr14:35169000-35170200	Enhancers	Colon Smooth Muscle	Colon
16	chr14:35169400-35170400	Enhancers	NHLF	lung
17	chr14:35169400-35170800	Enhancers	Hela-S3	cervix
18	chr14:35169400-35174000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr14:35169400-35177400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr14:35169600-35170200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr14:35169600-35170200	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr14:35169600-35181200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr14:35169800-35170400	Enhancers	NHDF-Ad	bronchial
24	chr14:35169800-35171600	Enhancers	Osteobl	bone
25	chr14:35169800-35179200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr14:35169800-35180000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr14:35170000-35170200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:35170000-35170400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:35170000-35170400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:35170000-35170400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr14:35170000-35170400	Flanking Active TSS	A549	lung
32	chr14:35170000-35170800	Enhancers	Muscle Satellite Cultured Cells	--
33	chr14:35170000-35176200	Weak transcription	Brain Hippocampus Middle	brain

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