Variant report

Variant	rs7160443
Chromosome Location	chr14:78758796-78758797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12432657	0.84[EUR][1000 genomes]
rs12891942	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17107300	1.00[YRI][hapmap]
rs1882810	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2063985	1.00[YRI][hapmap]
rs2272582	1.00[ASW][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36031356	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4903734	1.00[YRI][hapmap]
rs4903738	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903745	0.82[CHB][hapmap];0.94[JPT][hapmap];0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7158445	0.86[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7160443	TSHR	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78731000-78764200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr14:78738600-78778200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:78738600-78779000	Weak transcription	Brain Angular Gyrus	brain
4	chr14:78749400-78764000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:78750200-78778400	Weak transcription	Brain Anterior Caudate	brain
6	chr14:78753000-78764200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:78757200-78759200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:78757400-78758800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr14:78757400-78758800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr14:78757400-78759800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr14:78757600-78758800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr14:78757600-78759200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr14:78757600-78764200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr14:78757800-78759200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr14:78758000-78763800	Weak transcription	Fetal Brain Male	brain
16	chr14:78758200-78758800	Enhancers	H9 Cell Line	embryonic stem cell
17	chr14:78758400-78763200	Weak transcription	Brain Germinal Matrix	brain
18	chr14:78758600-78759000	Enhancers	GM12878-XiMat	blood
19	chr14:78758600-78764200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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