Variant report

Variant	rs2272582
Chromosome Location	chr14:78748726-78748727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10145519	0.80[YRI][hapmap]
rs12432657	0.89[ASN][1000 genomes]
rs12891942	0.95[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17107300	1.00[YRI][hapmap]
rs1882810	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2063985	0.91[YRI][hapmap]
rs36031356	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4903734	0.91[YRI][hapmap]
rs4903738	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4903745	0.94[JPT][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7158445	0.91[CHB][hapmap]
rs7160443	1.00[ASW][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs987324	0.82[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2272582	TSHR	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78731000-78764200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr14:78738600-78778200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:78738600-78779000	Weak transcription	Brain Angular Gyrus	brain
4	chr14:78745000-78757800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:78745200-78751800	Weak transcription	Brain Germinal Matrix	brain
6	chr14:78748400-78749600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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