Variant report

Variant	rs987324
Chromosome Location	chr14:78705318-78705319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12432033	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12891942	0.87[CEU][hapmap]
rs2178864	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2272582	0.82[CHB][hapmap]
rs7158445	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs984556	0.89[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs987324	TSHR	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78694200-78706800	Weak transcription	Brain Angular Gyrus	brain
2	chr14:78699400-78714200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:78699800-78709000	Weak transcription	Brain Anterior Caudate	brain
4	chr14:78704800-78705800	Weak transcription	Brain Hippocampus Middle	brain
5	chr14:78705000-78707200	Enhancers	Brain Germinal Matrix	brain
6	chr14:78705200-78705400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr14:78705200-78721600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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