Variant report

Variant	rs7160858
Chromosome Location	chr14:105953474-105953475
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:103)
CpG islands
(count:61)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:103 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr14:105953244-105954298	GM12878	blood:	n/a	n/a
2	JUND	chr14:105953340-105954053	A549	lung:	n/a	n/a
3	BHLHE40	chr14:105953226-105954274	GM12878	blood:	n/a	n/a
4	SP1	chr14:105953191-105953843	A549	lung:	n/a	n/a
5	POLR2A	chr14:105953418-105953889	ProgFib	skin:	n/a	n/a
6	POLR2A	chr14:105953143-105953811	PANC-1	pancreas:	n/a	n/a
7	SP1	chr14:105953186-105953727	A549	lung:	n/a	n/a
8	EBF1	chr14:105952632-105953676	GM12878	blood:	n/a	chr14:105952942-105952953
9	PML	chr14:105953293-105954352	GM12878	blood:	n/a	n/a
10	YY1	chr14:105953469-105953661	HCT-116	colon:	n/a	n/a
11	POLR2A	chr14:105953196-105954730	A549	lung:	n/a	n/a
12	CEBPD	chr14:105953408-105953722	HepG2	liver:	n/a	n/a
13	YY1	chr14:105953415-105953774	A549	lung:	n/a	n/a
14	POLR2A	chr14:105953194-105953998	A549	lung:	n/a	n/a
15	POU2F2	chr14:105953454-105953722	GM12878	blood:	n/a	n/a
16	TAF1	chr14:105953417-105953739	HepG2	liver:	n/a	n/a
17	POLR2A	chr14:105953248-105953937	A549	lung:	n/a	n/a
18	GABPA	chr14:105953462-105953864	H1-hESC	embryonic stem cell:	n/a	n/a
19	POLR2A	chr14:105953206-105954312	GM19099	blood:	n/a	n/a
20	E2F1	chr14:105953471-105954588	Hela-S3	cervix:	n/a	n/a
21	TBP	chr14:105953415-105953556	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr14:105953343-105954314	HCT-116	colon:	n/a	n/a
23	POLR2A	chr14:105953392-105954059	GM10847	blood:	n/a	n/a
24	HEY1	chr14:105953350-105953731	HepG2	liver:	n/a	n/a
25	POLR2A	chr14:105953248-105954670	GM12892	blood:	n/a	n/a
26	TCF12	chr14:105952993-105954681	A549	lung:	n/a	n/a
27	MAX	chr14:105953179-105954867	A549	lung:	n/a	n/a
28	POLR2A	chr14:105953258-105954243	GM18526	blood:	n/a	n/a
29	ZBTB7A	chr14:105953408-105953585	HepG2	liver:	n/a	n/a
30	POLR2A	chr14:105953316-105953695	HepG2	liver:	n/a	n/a
31	TCF12	chr14:105953432-105953633	GM12878	blood:	n/a	n/a
32	POLR2A	chr14:105953232-105954751	HCT-116	colon:	n/a	n/a
33	POLR2A	chr14:105953327-105958531	HepG2	liver:	n/a	n/a
34	POLR2A	chr14:105953348-105953739	HepG2	liver:	n/a	n/a
35	CHD2	chr14:105953252-105954610	GM12878	blood:	n/a	n/a
36	POLR2A	chr14:105953236-105954715	GM12878	blood:	n/a	n/a
37	TCF3	chr14:105953447-105954266	GM12878	blood:	n/a	n/a
38	ELF1	chr14:105952086-105954603	GM12878	blood:	n/a	n/a
39	POLR2A	chr14:105952842-105954795	HepG2	liver:	n/a	n/a
40	TBP	chr14:105953456-105953663	H1-hESC	embryonic stem cell:	n/a	n/a
41	POLR2A	chr14:105953388-105958117	Hela-S3	cervix:	n/a	n/a
42	POLR2A	chr14:105953351-105954522	HL-60	blood:	n/a	n/a
43	POLR2A	chr14:105953261-105953983	ECC-1	luminal epithelium:	n/a	n/a
44	POLR2A	chr14:105953350-105954628	GM12878	blood:	n/a	n/a
45	POLR2A	chr14:105953275-105953801	HepG2	liver:	n/a	n/a
46	MAZ	chr14:105953447-105954709	Hela-S3	cervix:	n/a	n/a
47	REST	chr14:105953454-105953654	A549	lung:	n/a	n/a
48	POLR2A	chr14:105953076-105954564	GM15510	blood:	n/a	n/a
49	POLR2A	chr14:105953191-105954750	GM12878	blood:	n/a	n/a
50	POLR2A	chr14:105953413-105954256	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:105953462-105953512	NHBE	bronchial:	n/a
2	chr14:105953462-105953512	HAEpiC	amniotic membrane:	n/a
3	chr14:105953462-105953512	IMR90	lung:	fetal
4	chr14:105953462-105953512	HCF	heart:	n/a
5	chr14:105953462-105953512	RPTEC	kidney:	n/a
6	chr14:105953462-105953512	NB4	blood:	n/a
7	chr14:105953462-105953512	HEK293	kidney:	embryo
8	chr14:105953462-105953512	Jurkat	blood:	n/a
9	chr14:105953462-105953512	BE2_C	brain:	n/a
10	chr14:105953462-105953512	HL-60	blood:	n/a
11	chr14:105953462-105953512	NH-A	brain:	n/a
12	chr14:105953462-105953512	GM12892	blood:	n/a
13	chr14:105953462-105953512	U87	brain:	n/a
14	chr14:105953462-105953512	CMK	blood:	n/a
15	chr14:105953462-105953512	HCPEpiC	choroid plexus:	n/a
16	chr14:105953462-105953512	HIPEpiC	eye:	n/a
17	chr14:105953462-105953512	AG10803	skin:	n/a
18	chr14:105953462-105953512	NT2-D1	testis:	n/a
19	chr14:105953462-105953512	SK-N-SH	brain:	n/a
20	chr14:105953462-105953512	HepG2	liver:	n/a
21	chr14:105953462-105953512	HRE	kidney:	n/a
22	chr14:105953462-105953512	K562	blood:	n/a
23	chr14:105953462-105953512	PANC-1	pancreas:	n/a
24	chr14:105953462-105953512	Hela-S3	cervix:	n/a
25	chr14:105953462-105953512	PFSK-1	brain:	n/a
26	chr14:105953462-105953512	BJ	skin:	n/a
27	chr14:105953462-105953512	GM12891	blood:	n/a
28	chr14:105953462-105953512	HCM	heart:	n/a
29	chr14:105953462-105953512	AG04449	skin:	fetal
30	chr14:105953462-105953512	SKMC	muscle:	n/a
31	chr14:105953462-105953512	SAEC	small airway:	n/a
32	chr14:105953462-105953512	NHDF-neo	bronchial:	n/a
33	chr14:105953462-105953512	PrEC	prostate:	n/a
34	chr14:105953462-105953512	SK-N-MC	brain:	n/a
35	chr14:105953462-105953512	GM06990	blood:	n/a
36	chr14:105953462-105953512	AG09319	gingival:	n/a
37	chr14:105953462-105953512	T-47D	breast:	n/a
38	chr14:105953462-105953512	HEEpiC	esophagus:	n/a
39	chr14:105953462-105953512	ECC-1	luminal epithelium:	n/a
40	chr14:105953462-105953512	GM19239	blood:	n/a
41	chr14:105953462-105953512	LNCaP	prostate:	n/a
42	chr14:105953462-105953512	MCF-7	breast:	n/a
43	chr14:105953462-105953512	H1-hESC	embryonic stem cell:	embryo
44	chr14:105953462-105953512	AG09309	skin:	n/a
45	chr14:105953462-105953512	A549	lung:	n/a
46	chr14:105953462-105953512	ProgFib	skin:	n/a
47	chr14:105953462-105953512	AG04450	lung:	fetal
48	chr14:105953462-105953512	MCF10A-Er-Src	breast:	n/a
49	chr14:105953462-105953512	SK-N-SH_RA	brain:	n/a
50	chr14:105953462-105953512	HCT-116	colon:	n/a

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105950410..105961012-chr14:105989009..105997120,20	MCF-7	breast:
2	chr14:105953278..105954002-chr3:25727869..25728890,8	HCT-116	colon:
3	chr14:105878253..105887592-chr14:105952988..105961277,12	MCF-7	breast:
4	chr14:105952341..105954559-chr3:25726889..25729872,2	MCF-7	breast:
5	chr14:105953115..105953926-chr7:5569892..5570773,2	Hela-S3	cervix:
6	chr14:105950525..105959761-chr14:105989345..105997494,25	MCF-7	breast:
7	chr12:120729250..120729823-chr14:105953213..105954129,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000257341	TF binding region
C14orf80	TF binding region
CRIP1	TF binding region
ENSG00000257341	CpG island
CRIP1	CpG island
C14orf80	CpG island
ENSG00000184986	Chromatin interaction
ENSG00000251602	Chromatin interaction
ENSG00000182979	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000238225	Chromatin interaction
ENSG00000075624	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10138891	0.82[AMR][1000 genomes]
rs11160845	0.82[AMR][1000 genomes]
rs12323571	0.82[AMR][1000 genomes]
rs4983422	0.82[AMR][1000 genomes]
rs4983423	0.82[AMR][1000 genomes]
rs7140395	0.82[AMR][1000 genomes]
rs7158977	0.82[AMR][1000 genomes]
rs73362069	0.82[AMR][1000 genomes]
rs8012089	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105946800-105955200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:105947000-105955200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr14:105947400-105953600	Enhancers	Lung	lung
4	chr14:105948000-105954200	Enhancers	Fetal Heart	heart
5	chr14:105948000-105954400	Enhancers	Spleen	Spleen
6	chr14:105948400-105953600	Enhancers	Primary B cells from cord blood	blood
7	chr14:105949000-105953600	Weak transcription	Ovary	ovary
8	chr14:105949600-105953600	Weak transcription	Dnd41	blood
9	chr14:105951600-105953600	Weak transcription	HSMM	muscle
10	chr14:105952000-105953600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:105952000-105955200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:105952200-105953800	Bivalent Enhancer	HUVEC	blood vessel
13	chr14:105952200-105953800	Bivalent Enhancer	NHEK	skin
14	chr14:105952200-105955400	Bivalent Enhancer	Fetal Brain Male	brain
15	chr14:105952200-105956800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr14:105952400-105953600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
17	chr14:105952400-105953600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:105952400-105953600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
19	chr14:105952400-105953600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
20	chr14:105952400-105953600	Enhancers	NHDF-Ad	bronchial
21	chr14:105952400-105953800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
22	chr14:105952400-105953800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
23	chr14:105952400-105954000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr14:105952400-105954200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
25	chr14:105952400-105954200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr14:105952400-105954200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr14:105952400-105954400	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
28	chr14:105952400-105954600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr14:105952400-105955000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
30	chr14:105952600-105954000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
31	chr14:105952600-105954200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
32	chr14:105952600-105954200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
33	chr14:105952600-105954600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr14:105952600-105955000	Weak transcription	K562	blood
35	chr14:105952600-105955200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
36	chr14:105952600-105956800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
37	chr14:105952600-105957200	Flanking Active TSS	Stomach Smooth Muscle	stomach
38	chr14:105952800-105953600	Weak transcription	Gastric	stomach
39	chr14:105952800-105953600	Enhancers	Stomach Mucosa	stomach
40	chr14:105952800-105953600	Bivalent Enhancer	NH-A	brain
41	chr14:105952800-105953800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr14:105952800-105953800	Active TSS	Brain Anterior Caudate	brain
43	chr14:105952800-105954000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr14:105952800-105954200	Flanking Active TSS	Adipose Nuclei	Adipose
45	chr14:105952800-105954200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
46	chr14:105952800-105954200	Active TSS	HepG2	liver
47	chr14:105952800-105954400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr14:105952800-105954400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
49	chr14:105952800-105954400	Flanking Active TSS	Primary hematopoietic stem cells	blood
50	chr14:105952800-105954400	Active TSS	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links