Variant report

Variant	rs7161173
Chromosome Location	chr14:81546089-81546090
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs60368313	0.83[AMR][1000 genomes]
rs6574624	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7143450	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7148874	0.86[AFR][1000 genomes]
rs7160409	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334088	0.83[AMR][1000 genomes]
rs73334089	0.83[AMR][1000 genomes]
rs73334091	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73335922	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73335936	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8007948	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8008555	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8008556	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8013535	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1038949	chr14:81543590-81579896	Weak transcription Enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81537000-81554200	Weak transcription	Fetal Thymus	thymus
2	chr14:81538200-81593000	Weak transcription	Psoas Muscle	Psoas
3	chr14:81545800-81551000	Weak transcription	Dnd41	blood
4	chr14:81546000-81548600	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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