Variant report

Variant	rs8013535
Chromosome Location	chr14:81562876-81562877
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17111406	1.00[EUR][1000 genomes]
rs60368313	0.83[AMR][1000 genomes]
rs6574623	1.00[EUR][1000 genomes]
rs6574624	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7143450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7160409	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7161173	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334088	0.83[AMR][1000 genomes]
rs73334089	0.83[AMR][1000 genomes]
rs73334091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73335908	1.00[EUR][1000 genomes]
rs73335922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73335936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8007948	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8008555	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8008556	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1038949	chr14:81543590-81579896	Weak transcription Enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv9159	chr14:81561955-81564318	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81538200-81593000	Weak transcription	Psoas Muscle	Psoas
2	chr14:81549000-81572400	Weak transcription	Left Ventricle	heart
3	chr14:81557000-81572800	Strong transcription	Dnd41	blood
4	chr14:81557400-81567600	Strong transcription	Thymus	Thymus
5	chr14:81558800-81564000	Weak transcription	Fetal Thymus	thymus
6	chr14:81562000-81563400	Enhancers	HepG2	liver
7	chr14:81562200-81563400	Enhancers	Liver	Liver
8	chr14:81562400-81563000	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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