Variant report

Variant	rs73335908
Chromosome Location	chr14:81560638-81560639
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17111406	1.00[EUR][1000 genomes]
rs6574623	1.00[EUR][1000 genomes]
rs7143450	1.00[EUR][1000 genomes]
rs7144058	0.80[AFR][1000 genomes]
rs73334084	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334091	1.00[EUR][1000 genomes]
rs73335922	1.00[EUR][1000 genomes]
rs73335936	1.00[EUR][1000 genomes]
rs8013535	1.00[EUR][1000 genomes]
rs965053	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1038949	chr14:81543590-81579896	Weak transcription Enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81538200-81593000	Weak transcription	Psoas Muscle	Psoas
2	chr14:81549000-81572400	Weak transcription	Left Ventricle	heart
3	chr14:81550600-81561000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr14:81557000-81572800	Strong transcription	Dnd41	blood
5	chr14:81557400-81567600	Strong transcription	Thymus	Thymus
6	chr14:81557600-81561600	Strong transcription	Liver	Liver
7	chr14:81558800-81564000	Weak transcription	Fetal Thymus	thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links