Variant report

Variant	rs71628000
Chromosome Location	chr5:59559393-59559394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13160694	1.00[AMR][1000 genomes]
rs13173085	1.00[AMR][1000 genomes]
rs34762325	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv4847	chr5:59523591-59569307	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59554200-59562400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr5:59554400-59561600	Weak transcription	HepG2	liver
3	chr5:59554800-59559600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:59556600-59561200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:59558400-59559600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:59558400-59560600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr5:59558600-59563600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:59558800-59559600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr5:59559000-59559600	Enhancers	Primary B cells from cord blood	blood
10	chr5:59559200-59560200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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