Variant report

Variant	rs7163332
Chromosome Location	chr15:75193623-75193624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:18)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:18 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:75187739-75194836	PFSK-1	brain:	n/a	n/a
2	CTCF	chr15:75193530-75194700	SK-N-SH	brain:	n/a	n/a
3	CTCF	chr15:75193620-75193770	HAc	cerebellar:	n/a	n/a
4	POLR2A	chr15:75193609-75194589	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr15:75188926-75194641	U87	brain:	n/a	n/a
6	POLR2A	chr15:75192283-75194573	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr15:75187473-75194577	MCF10A-Er-Src	breast:	n/a	n/a
8	POLR2A	chr15:75187279-75194196	HepG2	liver:	n/a	n/a
9	POLR2A	chr15:75191137-75195522	K562	blood:	n/a	n/a
10	CTCF	chr15:75193580-75193730	HRPEpiC	eye:	n/a	n/a
11	POLR2A	chr15:75187680-75194520	SK-N-MC	brain:	n/a	n/a
12	POLR2A	chr15:75191144-75194333	K562	blood:	n/a	n/a
13	POLR2A	chr15:75188556-75193697	PANC-1	pancreas:	n/a	n/a
14	POLR2A	chr15:75192296-75195541	GM12878	blood:	n/a	n/a
15	CTCF	chr15:75193154-75194747	A549	lung:	n/a	n/a
16	POLR2A	chr15:75193102-75193626	K562	blood:	n/a	n/a
17	CTCF	chr15:75193620-75193770	HFF-Myc	foreskin:	n/a	n/a
18	CTCF	chr15:75193480-75193630	BJ	skin:	n/a	n/a

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75182023..75183146-chr15:75193618..75194575,3	K562	blood:
2	chr15:75131329..75142649-chr15:75180088..75200119,60	MCF-7	breast:
3	chr15:75163746..75165751-chr15:75191304..75195509,4	K562	blood:
4	chr15:75132595..75137581-chr15:75190842..75194074,4	K562	blood:
5	chr15:75161914..75167776-chr15:75191644..75199761,13	MCF-7	breast:
6	chr15:75152181..75153683-chr15:75192918..75194576,2	K562	blood:
7	chr15:75133969..75135985-chr15:75193356..75196066,3	K562	blood:
8	chr15:75120959..75123170-chr15:75193396..75195091,2	MCF-7	breast:
9	chr15:75135336..75137971-chr15:75192308..75194100,2	MCF-7	breast:
10	chr15:75191256..75201000-chr15:75228549..75233626,13	K562	blood:
11	chr15:75144129..75146019-chr15:75191068..75193901,2	MCF-7	breast:
12	chr15:75181107..75185393-chr15:75190667..75200295,16	MCF-7	breast:
13	chr15:75074806..75076876-chr15:75192504..75194161,2	K562	blood:
14	chr15:75091765..75094357-chr15:75191183..75194158,2	MCF-7	breast:

No data

Variant related genes	Relation type
FAM219B	TF binding region
ENSG00000140474	Chromatin interaction
ENSG00000178741	Chromatin interaction
ENSG00000140497	Chromatin interaction
ENSG00000178802	Chromatin interaction
ENSG00000103653	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12593975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1531162	0.86[TSI][hapmap]
rs1531163	1.00[CEU][hapmap];0.86[TSI][hapmap]
rs16973172	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2229730	0.86[TSI][hapmap]
rs2305667	0.85[GIH][hapmap];0.87[TSI][hapmap]
rs28397782	0.86[TSI][hapmap]
rs2899827	0.86[TSI][hapmap]
rs3743486	0.86[TSI][hapmap]
rs3743487	0.81[GIH][hapmap];0.93[TSI][hapmap]
rs3803568	0.86[TSI][hapmap]
rs4886620	0.86[TSI][hapmap]
rs4886638	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7165811	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs8039046	0.86[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75183200-75197600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:75183600-75193800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr15:75183600-75193800	Strong transcription	Fetal Stomach	stomach
4	chr15:75184000-75195400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:75184200-75196600	Weak transcription	Small Intestine	intestine
6	chr15:75185000-75193800	Strong transcription	Fetal Intestine Small	intestine
7	chr15:75185000-75194800	Weak transcription	Right Atrium	heart
8	chr15:75185200-75193800	Strong transcription	Fetal Intestine Large	intestine
9	chr15:75185200-75197000	Weak transcription	Fetal Heart	heart
10	chr15:75186800-75195800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:75187600-75193800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:75187600-75197200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:75187800-75193800	Strong transcription	Duodenum Mucosa	Duodenum
14	chr15:75187800-75193800	Strong transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:75187800-75194000	Strong transcription	A549	lung
16	chr15:75187800-75196600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:75187800-75196800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:75187800-75197400	Strong transcription	Fetal Thymus	thymus
19	chr15:75188000-75193800	Strong transcription	Brain Hippocampus Middle	brain
20	chr15:75188000-75193800	Strong transcription	K562	blood
21	chr15:75188000-75196000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:75188000-75196800	Strong transcription	Brain Germinal Matrix	brain
23	chr15:75188000-75197000	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr15:75188000-75197000	Strong transcription	Fetal Brain Female	brain
25	chr15:75188000-75197600	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr15:75188200-75193800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:75188200-75193800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr15:75188200-75193800	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr15:75188200-75195000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr15:75188200-75195600	Strong transcription	Placenta Amnion	Placenta Amnion
31	chr15:75188200-75197400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:75188200-75197400	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr15:75188200-75197600	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr15:75188400-75193800	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr15:75188400-75193800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:75188400-75193800	Strong transcription	NHLF	lung
37	chr15:75188400-75196600	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr15:75188400-75197400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
39	chr15:75188400-75197400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:75188400-75197600	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr15:75188600-75193800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr15:75188600-75193800	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr15:75188600-75193800	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr15:75188600-75193800	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr15:75188600-75194000	Strong transcription	Brain Cingulate Gyrus	brain
46	chr15:75188600-75196800	Strong transcription	NHEK	skin
47	chr15:75188600-75197400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:75188600-75197400	Strong transcription	Brain Angular Gyrus	brain
49	chr15:75188800-75197400	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr15:75188800-75197400	Strong transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links