Variant report

Variant	rs7165811
Chromosome Location	chr15:75150233-75150234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:75150130-75150530	GM12891	blood:	n/a	n/a
2	MTA3	chr15:75149053-75151020	GM12878	blood:	n/a	n/a
3	FOXM1	chr15:75149425-75150611	GM12878	blood:	n/a	n/a
4	RUNX3	chr15:75149343-75150774	GM12878	blood:	n/a	n/a
5	EBF1	chr15:75150087-75150626	GM12878	blood:	n/a	n/a
6	RUNX3	chr15:75149301-75150801	GM12878	blood:	n/a	n/a
7	EBF1	chr15:75150174-75150688	GM12878	blood:	n/a	n/a
8	NFIC	chr15:75149537-75150255	GM12878	blood:	n/a	n/a
9	POLR2A	chr15:75150140-75150692	GM12892	blood:	n/a	n/a
10	STAT5A	chr15:75149267-75151065	GM12878	blood:	n/a	n/a
11	NFIC	chr15:75149289-75150973	GM12878	blood:	n/a	n/a
12	CEBPB	chr15:75149428-75150685	GM12878	blood:	n/a	chr15:75150539-75150551
13	MTA3	chr15:75149244-75150678	GM12878	blood:	n/a	n/a
14	POLR2A	chr15:75149305-75150531	GM12878	blood:	n/a	n/a
15	SMC3	chr15:75150207-75150234	GM12878	blood:	n/a	n/a
16	WRNIP1	chr15:75150209-75150365	GM12878	blood:	n/a	n/a
17	POLR2A	chr15:75149363-75150535	GM12892	blood:	n/a	n/a
18	NFATC1	chr15:75149449-75150409	GM12878	blood:	n/a	n/a
19	PML	chr15:75149220-75150405	GM12878	blood:	n/a	chr15:75149857-75149866

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75135031..75137058-chr15:75147933..75151244,4	MCF-7	breast:
2	chr15:75145064..75147176-chr15:75149948..75152163,3	MCF-7	breast:
3	chr15:75149519..75152339-chr15:75154126..75156514,3	K562	blood:
4	chr15:75133522..75136505-chr15:75147774..75151280,5	K562	blood:
5	chr15:75149519..75152391-chr15:75152798..75156514,5	K562	blood:
6	chr15:75148024..75151438-chr15:75181657..75183712,3	MCF-7	breast:
7	chr15:75148295..75153393-chr15:75163740..75167147,7	MCF-7	breast:
8	chr15:75122920..75124833-chr15:75149449..75151725,2	K562	blood:

No data

Variant related genes	Relation type
SCAMP2	TF binding region
ENSG00000178802	Chromatin interaction
ENSG00000140497	Chromatin interaction
ENSG00000140474	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12438333	1.00[CEU][hapmap]
rs12439525	1.00[CEU][hapmap]
rs1531162	1.00[CEU][hapmap];0.86[TSI][hapmap]
rs1531163	1.00[CEU][hapmap];0.86[TSI][hapmap]
rs16973172	0.90[EUR][1000 genomes]
rs2229730	1.00[CEU][hapmap];0.86[TSI][hapmap]
rs2305667	0.82[CEU][hapmap];0.85[GIH][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes]
rs28397782	1.00[CEU][hapmap];0.86[TSI][hapmap]
rs2899827	1.00[CEU][hapmap];0.86[TSI][hapmap]
rs3743486	1.00[CEU][hapmap];0.86[TSI][hapmap]
rs3743487	1.00[CEU][hapmap];0.81[GIH][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs3803568	1.00[CEU][hapmap];0.86[TSI][hapmap]
rs4886409	1.00[CEU][hapmap]
rs4886620	1.00[CEU][hapmap];0.86[TSI][hapmap]
rs7163332	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs8039046	1.00[CEU][hapmap];0.86[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75136200-75155800	Weak transcription	NH-A	brain
2	chr15:75136200-75160000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:75136200-75161800	Weak transcription	Fetal Kidney	kidney
4	chr15:75136400-75158000	Weak transcription	NHDF-Ad	bronchial
5	chr15:75136600-75163000	Weak transcription	Fetal Brain Male	brain
6	chr15:75137000-75164800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:75137400-75150600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr15:75140000-75150400	Strong transcription	Primary T cells from cord blood	blood
9	chr15:75143600-75163000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:75145000-75160000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr15:75145400-75155200	Weak transcription	HMEC	breast
12	chr15:75146000-75158200	Weak transcription	NHLF	lung
13	chr15:75146000-75164800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:75146200-75155600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:75146200-75163200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr15:75146400-75155600	Weak transcription	Osteobl	bone
17	chr15:75146400-75155800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:75146400-75158400	Weak transcription	HUVEC	blood vessel
19	chr15:75146400-75160400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:75146400-75161800	Weak transcription	Fetal Lung	lung
21	chr15:75146400-75163200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr15:75146600-75159400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr15:75146600-75159400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr15:75146600-75160000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr15:75146600-75163000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr15:75146600-75164600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr15:75146800-75155800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr15:75146800-75158600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:75146800-75159800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:75147000-75158400	Weak transcription	Liver	Liver
31	chr15:75147000-75159600	Weak transcription	Fetal Brain Female	brain
32	chr15:75147000-75160000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:75147000-75164800	Weak transcription	Ovary	ovary
34	chr15:75147200-75150400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:75147200-75150400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr15:75147200-75153600	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr15:75147200-75159400	Weak transcription	Thymus	Thymus
38	chr15:75147200-75164800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr15:75148200-75150400	Enhancers	Psoas Muscle	Psoas
40	chr15:75148200-75150400	Enhancers	Right Atrium	heart
41	chr15:75148200-75151800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr15:75148200-75152400	Enhancers	Fetal Heart	heart
43	chr15:75148200-75152400	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr15:75148200-75152800	Enhancers	Primary B cells from peripheral blood	blood
45	chr15:75148200-75152800	Genic enhancers	Primary T cells fromperipheralblood	blood
46	chr15:75148200-75152800	Enhancers	Stomach Mucosa	stomach
47	chr15:75148400-75152600	Genic enhancers	Fetal Intestine Small	intestine
48	chr15:75148400-75152800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:75148800-75152600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr15:75149000-75150600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links