Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11630066	1.00[EUR][1000 genomes]
rs11630471	1.00[EUR][1000 genomes]
rs11631238	1.00[EUR][1000 genomes]
rs11637714	1.00[EUR][1000 genomes]
rs11638781	1.00[EUR][1000 genomes]
rs1711488	1.00[EUR][1000 genomes]
rs57073002	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58108332	1.00[EUR][1000 genomes]
rs58661360	1.00[EUR][1000 genomes]
rs59270467	1.00[EUR][1000 genomes]
rs59480187	1.00[EUR][1000 genomes]
rs60623475	1.00[EUR][1000 genomes]
rs61391531	1.00[EUR][1000 genomes]
rs7168320	1.00[EUR][1000 genomes]
rs7169816	1.00[EUR][1000 genomes]
rs7171060	1.00[EUR][1000 genomes]
rs7174112	1.00[EUR][1000 genomes]
rs7176311	1.00[EUR][1000 genomes]
rs7176960	1.00[EUR][1000 genomes]
rs7179204	1.00[EUR][1000 genomes]
rs7181220	1.00[EUR][1000 genomes]
rs73419877	1.00[EUR][1000 genomes]
rs73419878	1.00[EUR][1000 genomes]
rs73421980	1.00[EUR][1000 genomes]
rs73421983	1.00[EUR][1000 genomes]
rs73421988	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016519	1.00[EUR][1000 genomes]
rs959631	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1041239	chr15:56888945-56959028	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56896400-56900200	Weak transcription	HSMMtube	muscle
2	chr15:56898400-56900200	Enhancers	Dnd41	blood
3	chr15:56898400-56902200	Enhancers	Primary B cells from cord blood	blood
4	chr15:56899600-56901400	Flanking Active TSS	GM12878-XiMat	blood
5	chr15:56899600-56902000	Enhancers	Fetal Thymus	thymus
6	chr15:56899800-56901800	Enhancers	Primary B cells from peripheral blood	blood
7	chr15:56899800-56901800	Enhancers	Thymus	Thymus

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