Variant report

Variant	rs7174112
Chromosome Location	chr15:56897473-56897474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11630066	1.00[EUR][1000 genomes]
rs11630471	1.00[EUR][1000 genomes]
rs11631238	1.00[EUR][1000 genomes]
rs11637714	1.00[EUR][1000 genomes]
rs11638781	1.00[EUR][1000 genomes]
rs1711488	1.00[EUR][1000 genomes]
rs3199	0.82[YRI][hapmap]
rs58108332	1.00[EUR][1000 genomes]
rs58661360	1.00[EUR][1000 genomes]
rs59270467	1.00[EUR][1000 genomes]
rs59480187	1.00[EUR][1000 genomes]
rs60623475	1.00[EUR][1000 genomes]
rs61391531	1.00[EUR][1000 genomes]
rs7163771	1.00[EUR][1000 genomes]
rs7168320	1.00[EUR][1000 genomes]
rs7169816	1.00[EUR][1000 genomes]
rs7171060	1.00[EUR][1000 genomes]
rs7176311	1.00[EUR][1000 genomes]
rs7176960	1.00[EUR][1000 genomes]
rs7179204	1.00[EUR][1000 genomes]
rs7181220	1.00[EUR][1000 genomes]
rs73419877	1.00[EUR][1000 genomes]
rs73419878	1.00[EUR][1000 genomes]
rs73421980	1.00[EUR][1000 genomes]
rs73421983	1.00[EUR][1000 genomes]
rs73421988	1.00[EUR][1000 genomes]
rs74016519	1.00[EUR][1000 genomes]
rs959631	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1041239	chr15:56888945-56959028	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56895800-56897800	Weak transcription	Fetal Thymus	thymus
2	chr15:56896400-56900200	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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