Variant report

Variant	rs71644777
Chromosome Location	chr1:224364551-224364552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224301824..224303982-chr1:224364171..224366941,2	K562	blood:

Variant related genes	Relation type
ENSG00000143756	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10916370	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11576702	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11582248	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11582460	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12410321	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12722938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12736412	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12737029	0.89[ASN][1000 genomes]
rs12739782	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12749977	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16844823	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16856443	0.85[ASN][1000 genomes]
rs2008340	0.84[ASN][1000 genomes]
rs2087795	0.88[ASN][1000 genomes]
rs35177633	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35243286	0.85[ASN][1000 genomes]
rs35540939	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61826374	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61826409	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6656849	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6657195	0.88[ASN][1000 genomes]
rs6687643	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71644775	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71644776	0.88[ASN][1000 genomes]
rs9662363	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832692	chr1:224206536-224407717	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv8857	chr1:224359943-224383023	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224346400-224370000	Weak transcription	Esophagus	oesophagus
2	chr1:224359000-224369200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr1:224359000-224369200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:224359000-224370200	Weak transcription	Small Intestine	intestine
5	chr1:224362800-224369600	Weak transcription	Fetal Intestine Small	intestine
6	chr1:224363200-224364600	Enhancers	Placenta	Placenta
7	chr1:224363200-224365800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr1:224363400-224369600	Weak transcription	Fetal Intestine Large	intestine
9	chr1:224363400-224370000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr1:224363600-224370000	Weak transcription	HMEC	breast
11	chr1:224363800-224364600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:224363800-224367200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:224363800-224368000	Weak transcription	Fetal Thymus	thymus
14	chr1:224363800-224368400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:224363800-224368600	Weak transcription	NHEK	skin
16	chr1:224363800-224368800	Weak transcription	Primary B cells from cord blood	blood
17	chr1:224363800-224369000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr1:224363800-224369600	Weak transcription	Thymus	Thymus
19	chr1:224363800-224369800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:224363800-224369800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr1:224363800-224369800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr1:224363800-224369800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr1:224363800-224369800	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr1:224363800-224370000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr1:224363800-224370000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:224363800-224370000	Weak transcription	Brain Anterior Caudate	brain
27	chr1:224363800-224370200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr1:224363800-224370200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr1:224363800-224370200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:224363800-224370200	Weak transcription	Brain Hippocampus Middle	brain
31	chr1:224363800-224370200	Weak transcription	Brain Substantia Nigra	brain
32	chr1:224363800-224370400	Weak transcription	Lung	lung
33	chr1:224364000-224367000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr1:224364000-224368800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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